Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02538 and BPUM_1436

See DNA alignment / Visit BSNT_02538 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:03
# Commandline: needle
#    -asequence pep-align/BSNT_02538___ylmD.1.24716.seq
#    -bsequence pep-align/BPUM_1436___ylmD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02538___ylmD-BPUM_1436___ylmD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02538___ylmD-BPUM_1436___ylmD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02538___ylmD
# 2: BPUM_1436___ylmD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 279
# Identity:     148/279 (53.0%)
# Similarity:   184/279 (65.9%)
# Gaps:          16/279 ( 5.7%)
# Score: 801.0
# 
#
#=======================================

BSNT_02538___      1 ----------------MIQDWAQTNQNNKEVIAGFTTKNGGVSQKPFESL     34
                                     ||.||.....:.|||:|||||||||.|..|::||
BPUM_1436___y      1 MTHNYDPFQQKSPDAMMIHDWTNMTCSGKEVLAGFTTKNGGFSLSPYQSL     50

BSNT_02538___     35 NTGLHVHDKDADVVKNREYIADMFNTDLQSWVFADQTHDNRVQKVTQRDR     84
                     ||||||.|..:.|..||:.|||.....|..||||||||::|::|||:..|
BPUM_1436___y     51 NTGLHVGDDASSVQMNRQVIADATAVPLSDWVFADQTHEDRIKKVTKEQR    100

BSNT_02538___     85 GKGAREYHTALKATDGLYTNEKNVFLALCFADCVPLFFYDPVKSLVGVAH    134
                     |:|:..||.||..||||||:|.|:.|||||||||||:|..|...|:|.||
BPUM_1436___y    101 GRGSLHYHEALPGTDGLYTSEPNIMLALCFADCVPLYFLAPQHGLIGTAH    150

BSNT_02538___    135 AGWKGTVKQIGREMVKQWTEKEGSNPSDIYAVIGPSISGACYTVDDRVMD    184
                     |||||||||||.:||..|..:||:....|..||||||...||.|||.|::
BPUM_1436___y    151 AGWKGTVKQIGAKMVDLWVNQEGAKTDQIQVVIGPSIGNCCYIVDDVVLN    200

BSNT_02538___    185 AVRALPVSADLAVNQTAKAQYQLDLKELNRLILMDSGLASEQISVSGLCT    234
                     .|:.||.|.:...:..::.||:||||.||:.:|:.:|:..|.|.||.:||
BPUM_1436___y    201 QVKQLPFSTEDVYSVISQGQYKLDLKTLNKNVLLHAGMKEENIHVSSMCT    250

BSNT_02538___    235 ESEPSLFYSHRRDQGKTGRMMSFIGMKEA    263
                     .....||:|||||||||||||||:|.|||
BPUM_1436___y    251 SCNDQLFFSHRRDQGKTGRMMSFVGFKEA    279


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