Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02538 and BPUM_1436
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_02538___ylmD.1.24716.seq
# -bsequence dna-align/BPUM_1436___ylmD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02538___ylmD-BPUM_1436___ylmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02538___ylmD-BPUM_1436___ylmD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02538___ylmD
# 2: BPUM_1436___ylmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 952
# Identity: 522/952 (54.8%)
# Similarity: 522/952 (54.8%)
# Gaps: 272/952 (28.6%)
# Score: 1334.0
#
#
#=======================================
BSNT_02538___ 1 ------------------------------------------------AT 2
||
BPUM_1436___y 1 TTGACACACAATTATGACCCCTTTCAGCAGAAATCACCTGATGCAATGAT 50
BSNT_02538___ 3 GATACAAGACTGGGCTCAAACGAATCAAAACA-------ACAAAGAGGTC 45
|||.||.||.||| ||||| ||..||| ..||||||||
BPUM_1436___y 51 GATTCATGATTGG------ACGAA-CATGACATGTTCTGGTAAAGAGGT- 92
BSNT_02538___ 46 ATT-GCCGGATTTACGACAAAAAACGGCGGTGTCAGCCAAAAGCCTTT-- 92
||| ||||||||||||||||||||.|||||..|| |||||||
BPUM_1436___y 93 ATTGGCCGGATTTACGACAAAAAATGGCGGCTTC-------AGCCTTTCT 135
BSNT_02538___ 93 -----TGAATCGTTAAATACAGGATTGCACGTTCATGACAAAGATGCAGA 137
|.||||.||.||.||.|||.|.||.|| |.| |||| ||
BPUM_1436___y 136 CCATATCAATCATTGAACACTGGACTCCATGT--AGG----AGAT---GA 176
BSNT_02538___ 138 TG----TAGT---TAAA--AATCGTGAATATATTGCCGATATGTTTAATA 178
|| |||| .||| ||||||.||...||.||.|| |..||
BPUM_1436___y 177 TGCTTCTAGTGTCCAAATGAATCGTCAAGTCATAGCAGA------TGCTA 220
BSNT_02538___ 179 CTGATTTGCAG---TC---TTGGGTATTCGCTGATCAGACACATGATAAT 222
|||.|.|||.| || ||||||.||.||.||.||.|||||.||..|.
BPUM_1436___y 221 CTGCTGTGCCGCTCTCTGATTGGGTGTTTGCAGACCAAACACACGAGGAC 270
BSNT_02538___ 223 CGCGTTCAGAAAGTGACGCAGAGGGATAGGGGAAAAGGCGCCCGTGAGTA 272
|||.|..|||||||.||..||..|.|.||.||||.|||....|.|.|.||
BPUM_1436___y 271 CGCATCAAGAAAGTCACCAAGGAGCAAAGAGGAAGAGGAAGTCTTCATTA 320
BSNT_02538___ 273 TCA-----CACGGCTCTAAAAGCAACGGACGGGCTCTATAC-----AAAT 312
||| |||.|| || |.|||.|||||..|.||||| ||..
BPUM_1436___y 321 TCATGAGGCACTGC-CT----GGAACTGACGGATTATATACGTCTGAACC 365
BSNT_02538___ 313 GAAAAAAATGTATTTTTAGCATTATGCTTTGCTGATTGTGTGCCTCTTTT 362
|||.|..||| .|.||..|.||.||.||.||||||||.||.| |||
BPUM_1436___y 366 GAACATCATG-----CTCGCTCTTTGTTTCGCCGATTGTGTTCCGC-TTT 409
BSNT_02538___ 363 CTTTTAT-GATCCGGTTAA---GTCGCTTGTCGGAGTCGCCCATGCCGGG 408
.||||.| |.|||| .|| |.| ||..|||||...|||||||||||.
BPUM_1436___y 410 ATTTTCTAGCTCCG--CAACATGGC-CTCATCGGAACAGCCCATGCCGGA 456
BSNT_02538___ 409 TGGAAAGGCACCGTCAAACAGATTG--GCAGAGAAATGGTGAAGCAATGG 456
||||||||.||||||||.||.|||| |||.|| |||||..|.|.||||
BPUM_1436___y 457 TGGAAAGGAACCGTCAAGCAAATTGGTGCAAAG--ATGGTAGATCTATGG 504
BSNT_02538___ 457 ----ACTGAGAAGG----AAG---GTTCAAATCCCTCAGATATTTACGCT 495
||..|||||| ||| |.||||||.| |.|..
BPUM_1436___y 505 GTCAACCAAGAAGGTGCTAAGACCGATCAAATAC-----------AAGTC 543
BSNT_02538___ 496 GTTATTGGCCCGTCTATCAGCGGA---GCATGCTATACGGTAGACGACCG 542
||.|||||.||.||.||..|| | || |||||.| |||
BPUM_1436___y 544 GTCATTGGACCATCCATTGGC--AATTGC-TGCTACA---TAG------- 580
BSNT_02538___ 543 CGTCATGGATGCTGT-------------------CCGCGCATTGCCGGTT 573
||||||.||| |.|| |.||..||
BPUM_1436___y 581 -----TGGATGATGTAGTCTTAAATCAAGTGAAACAGC----TTCCCTTT 621
BSNT_02538___ 574 TCAGCAGACCTTG------CCGTTA-ATCAGACGGCAAAGGCACAATATC 616
||..||||...|| ||||.| ||||.|.|| |||||||.
BPUM_1436___y 622 TCTACAGAGGATGTGTATTCCGTGATATCACAAGG-------ACAATATA 664
BSNT_02538___ 617 AGCTTGATCTGAAAGAGCTGAACCGTCTTATAC--------------TGA 652
|..|.|| ||.||| ||| .|||.|| |.|
BPUM_1436___y 665 AATTAGA-CTTAAA------AAC---ATTAAACAAAAACGTATTGCTTCA 704
BSNT_02538___ 653 TGGACAGCGGTTTGGCAAG-TGAACAAATTTCTGTCAGCGGTT---TATG 698
|| |||.|.| |.||| .|||.|.||...||||| ||| |.||
BPUM_1436___y 705 TG--CAGGGAT---GAAAGAAGAAAACATACATGTCA---GTTCGATGTG 746
BSNT_02538___ 699 CACGGAAAGC------GAGCCGTCTCTTTTCTATTCTCAC--CGCCGCGA 740
||| |||| ||.|.| ||.||| ||||||| ||.||.||
BPUM_1436___y 747 CAC---AAGCTGCAATGATCAG---CTATTC--TTCTCACATCGGCGTGA 788
BSNT_02538___ 741 TCAGGGGAAAACTGGACGGATGATGTCCTTTATCGGAATGAAGGAGGCAT 790
|||.||.|||||.|||||.||||||||.|||.||||..|.||||||||||
BPUM_1436___y 789 TCAAGGAAAAACAGGACGTATGATGTCTTTTGTCGGGTTTAAGGAGGCAT 838
BSNT_02538___ 791 AA 792
||
BPUM_1436___y 839 AA 840
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