Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02352 and BPUM_1301
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence pep-align/BSNT_02352___ykuD.1.24716.seq
# -bsequence pep-align/BPUM_1301___ykuD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02352___ykuD-BPUM_1301___ykuD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02352___ykuD-BPUM_1301___ykuD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02352___ykuD
# 2: BPUM_1301___ykuD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 173
# Identity: 113/173 (65.3%)
# Similarity: 135/173 (78.0%)
# Gaps: 14/173 ( 8.1%)
# Score: 580.5
#
#
#=======================================
BSNT_02352___ 1 MRKLLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQS----- 45
:|.|.||:|:||.|||.|||.:|.||..|||||| ||.
BPUM_1301___y 1 ---MLRYTVKRGETLASIALDFRTTTDALKAANPSLQ-----GQEPVQNE 42
BSNT_02352___ 46 -IVIPGLPDPYTIPYHIAVSIGAKTLTLFLNNRVMKTYPIAVGKILTQTP 94
|:|||||||.||||.|:|||.:|.|.||..:.::::||||.|:||..||
BPUM_1301___y 43 VIIIPGLPDPNTIPYRISVSISSKRLVLFSGSELIRSYPIATGRILNMTP 92
BSNT_02352___ 95 TGEFYIINRQRNPGGPFGAYWLSLSKQHYGIHGTNNPASIGKAVSKGCIR 144
||.:||:|||.|||||||||||||||.||||||||||:|||||||:||||
BPUM_1301___y 93 TGSYYIVNRQPNPGGPFGAYWLSLSKVHYGIHGTNNPSSIGKAVSRGCIR 142
BSNT_02352___ 145 MHNKDVIELASIVPNGTRVTINR 167
|:|::||||||||||||.|||::
BPUM_1301___y 143 MYNQNVIELASIVPNGTPVTISQ 165
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