Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02352 and BPUM_1301
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_02352___ykuD.1.24716.seq
# -bsequence dna-align/BPUM_1301___ykuD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02352___ykuD-BPUM_1301___ykuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02352___ykuD-BPUM_1301___ykuD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02352___ykuD
# 2: BPUM_1301___ykuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 559
# Identity: 345/559 (61.7%)
# Similarity: 345/559 (61.7%)
# Gaps: 116/559 (20.8%)
# Score: 956.5
#
#
#=======================================
BSNT_02352___ 1 ATGAGGAAACTGCT----TACGTACCAGGTGAAGCAAGGTGATACACTGA 46
.|||| || ||| |||.||.|..||.||.||.||
BPUM_1301___y 1 ---------GTGCTGCGATA--TAC--GGTAAAACGCGGAGAAACGCT-- 35
BSNT_02352___ 47 ACAGC----ATCGCGGCTGATTTCAGAATCAGC-ACGGCTGCATTACTCC 91
.|| ||.|||..||||||..||| ||.| ||.|.|||.||| .
BPUM_1301___y 36 --TGCTTCTATAGCGCTTGATTTTCGAA-CAACAACAGATGCTTTA---A 79
BSNT_02352___ 92 AGGCT---AATCCGTCACTGC-AGGC--AGGGCTCACCGCAGGACA---- 131
||||| ||.||.||||||| |||| ||.|| |.|.|||
BPUM_1301___y 80 AGGCTGCAAACCCTTCACTGCAAGGCCAAGAGC------CGGTACAAAAT 123
BSNT_02352___ 132 ---GTCCATAGTCATCCCCGGACTGCCGGACCCTTATACAATTCCGTATC 178
|| |||..||||.||.||.|||||.||.||..||||.||.||.||.|
BPUM_1301___y 124 GAGGT-CATCATCATTCCTGGTCTGCCCGATCCAAATACGATCCCTTACC 172
BSNT_02352___ 179 ATATCGCAGTCTCAA--TCGGAGCGAA-GACCC-------TTAC------ 212
..|||.|.||.|||| || .|||.|| |.|.| ||.|
BPUM_1301___y 173 GCATCTCTGTTTCAATTTC-AAGCAAACGTCTCGTCTTGTTTTCTGGATC 221
BSNT_02352___ 213 ---GCTG-TTCCTAAATAATCGGGTAATGAAAACCTATCCCATCGCCGTT 258
|||| ||| ||| |.|||||.||.||....
BPUM_1301___y 222 AGAGCTGATTC-----------GGT--------CGTATCCGATTGCAACA 252
BSNT_02352___ 259 GGTAAAATACTAACGCAA----ACGCCTACTGGCGAGTT----TTACATT 300
||.|.|||..|| || ||.||.||.| ||| |||.|||
BPUM_1301___y 253 GGAAGAATTTTA----AATATGACACCGACAG----GTTCTTATTATATT 294
BSNT_02352___ 301 ATTAACCGCCAGCGCAATCCC-GGCGGCCCATTTGGCGCTTATTGGCTGA 349
.|.|||.|.|||| |||.||| ||.||.||.||||||||.||||||||||
BPUM_1301___y 295 GTGAACAGACAGC-CAAACCCAGGAGGTCCCTTTGGCGCCTATTGGCTGA 343
BSNT_02352___ 350 GCCTTTCAAAGCAG--CACTACGGAATACATGGGACGAATAATCCCG-CT 396
||||.||.|| || ||.|||||.||.||.||.|||||||| |||| ||
BPUM_1301___y 344 GCCTCTCGAA--AGTTCATTACGGCATTCACGGTACGAATAA-CCCGTCT 390
BSNT_02352___ 397 TCGATTGGTAAGGCTGTTTCTAAAGGCTGCATTCGCATGCATAA-CAAAG 445
||.||||||||.|||||.||||.|||.||||||||.|||.|||| ||.|
BPUM_1301___y 391 TCAATTGGTAAAGCTGTGTCTAGAGGATGCATTCGTATGTATAATCAGA- 439
BSNT_02352___ 446 ACGTGATCGAACTTGCTTCAATTGTGCCAAACGGAACAAGAGTCACGATT 495
|.||.|||||||||||||||||.||.|||||.||||||...||.||.|||
BPUM_1301___y 440 ATGTCATCGAACTTGCTTCAATCGTTCCAAATGGAACACCTGTGACCATT 489
BSNT_02352___ 496 AACCGGTAA 504
|.||.||||
BPUM_1301___y 490 AGCCAGTAA 498
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