Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02339 and BPUM_1288

See DNA alignment / Visit BSNT_02339 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:48
# Commandline: needle
#    -asequence pep-align/BSNT_02339___ykwD.1.24716.seq
#    -bsequence pep-align/BPUM_1288___ykwD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02339___ykwD-BPUM_1288___ykwD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02339___ykwD-BPUM_1288___ykwD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02339___ykwD
# 2: BPUM_1288___ykwD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 269
# Identity:     127/269 (47.2%)
# Similarity:   160/269 (59.5%)
# Gaps:          34/269 (12.6%)
# Score: 586.5
# 
#
#=======================================

BSNT_02339___      1 -MKKAFILSAAAAVGLFTFGGVQQASAKELSCQPVVTVKTGNTVQNMSLN     49
                      .||:|..||..|..|.||.|...|.||||:.:.|:.|:.    |.:.|:
BPUM_1288___y      1 MKKKSFFFSALTAAALITFTGGHSADAKELNLKQVIQVQH----QTIDLH     46

BSNT_02339___     50 DAVKKLHINTNIKTLNAANEKEIKQFLQKHAKQSNV-----------KVQ     88
                     ....||||::::..|:.:|:|||:..|.|..|....           |.:
BPUM_1288___y     47 TLAAKLHISSDVNKLSKSNQKEIEALLNKLIKSGQPVTGTKVVKEVNKAK     96

BSNT_02339___     89 DVQKTETAKPAQKTTEKAAADQNTASKAPATAEKTNTTTSAPSSVSAYEK    138
                     :.||.|:.|....:.....|.|||.:...|. :|..|.|.|.||::|:||
BPUM_1288___y     97 NEQKQESVKKPTASKPSTPAKQNTNNNTKAD-QKDTTATKADSSLNAFEK    145

BSNT_02339___    139 KVVELTNAERQKQGLKPLQIDETLSKSARAKSQDMKDKNYFDHQSPTYGS    188
                     :||||||.||.|||||.|.:|..||||||||||||||||||.|.||||||
BPUM_1288___y    146 EVVELTNKERAKQGLKALSVDSKLSKSARAKSQDMKDKNYFSHTSPTYGS    195

BSNT_02339___    189 PFDMMKSFGISYKTAGENIAKGQKTPEEVVKAWMNSEGHRKNILNGSVI-    237
                     |||.||.|||:|||||||||:||::|:|||.|||||||||.||||.:.. 
BPUM_1288___y    196 PFDQMKQFGITYKTAGENIAQGQRSPQEVVTAWMNSEGHRANILNKNYTH    245

BSNT_02339___    238 LTV----------------    240
                     :.|                
BPUM_1288___y    246 IGVGYVKSGNYWTQQFIGK    264


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