Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02339 and BPUM_1288

See Amino acid alignment / Visit BSNT_02339 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:48
# Commandline: needle
#    -asequence dna-align/BSNT_02339___ykwD.1.24716.seq
#    -bsequence dna-align/BPUM_1288___ykwD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02339___ykwD-BPUM_1288___ykwD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02339___ykwD-BPUM_1288___ykwD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02339___ykwD
# 2: BPUM_1288___ykwD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity:     508/890 (57.1%)
# Similarity:   508/890 (57.1%)
# Gaps:         262/890 (29.4%)
# Score: 1452.0
# 
#
#=======================================

BSNT_02339___      1 ---ATGAAGAAAGCATTTATTTTATCTGCTGCCGCT----GCGGTTGGAT     43
                        |.|||||||.||||..||||.||.|    ||||    ||.|.||.|.
BPUM_1288___y      1 ATGAAGAAGAAATCATTCTTTTTTTCAG----CGCTAACGGCTGCTGCAC     46

BSNT_02339___     44 TATTCACATTC----GGGGGCGTACAGCAAGCATCA-GCGAAAGAACTCT     88
                     |..||||.|||    ||||.|.|.||||     |.| |||||.||.||  
BPUM_1288___y     47 TCATCACGTTCACTGGGGGACATTCAGC-----TGATGCGAAGGAGCT--     89

BSNT_02339___     89 CCTGCCAGCCTGTGGTTACAGTAAAAACGGGGAACACAGTACA-----AA    133
                          .|.||||          |||.|.|.|..||| ||||||     ||
BPUM_1288___y     90 -----TAACCTG----------AAACAAGTGATACA-AGTACAGCATCAA    123

BSNT_02339___    134 AC-----ATGT-----CACTTAACGATGCAGTGAAAAAACTGCATA----    169
                     ||     ||.|     || |||  |.|||      ||||.|.||||    
BPUM_1288___y    124 ACCATTGATCTTCATACA-TTA--GCTGC------AAAATTACATATCTC    164

BSNT_02339___    170 TTAACACAAATATCAAAACGTTAAACGCTGCA-----AACGAAAAAGAGA    214
                     ||    ||.||.|.||.|.|.|||     |||     ||..|||||||||
BPUM_1288___y    165 TT----CAGATGTAAACAAGCTAA-----GCAAGTCGAATCAAAAAGAGA    205

BSNT_02339___    215 -----------TTAAGCAGTTTCTTCAAAAACATGCGAAGCAATCTAACG    253
                                ||||.||..||..||||         ||||..|| |||.
BPUM_1288___y    206 TCGAAGCTCTTTTAAACAAGTTGATCAA---------AAGCGGTC-AACC    245

BSNT_02339___    254 TG-----------AAAGTTCAGGATGTTCAAAAGACAG-AAAC--GGCCA    289
                     ||           |||||    |.||    ||||| || ||||  .||.|
BPUM_1288___y    246 TGTTACTGGCACAAAAGT----GGTG----AAAGA-AGTAAACAAAGCAA    286

BSNT_02339___    290 AACCTGCACAAAAGACTACTGAAAAAGCAGCTGCTGATCAAAAC--ACTG    337
                     ||..||.||||||    ||  ||.||.|||    ||| .|||||  ||||
BPUM_1288___y    287 AAAATGAACAAAA----AC--AAGAATCAG----TGA-AAAAACCTACTG    325

BSNT_02339___    338 CTTCTAAAGCA------CCCG------------------------CAACT    357
                     ||||||||.||      ||.|                        |||..
BPUM_1288___y    326 CTTCTAAACCAAGTACGCCAGCAAAACAAAACACAAATAACAATACAAAA    375

BSNT_02339___    358 GCTGA--AAAAACAAACA----CAACAACATCT----GCACCTTCATCTG    397
                     |||||  |||||.|.|||    ||||||.|.||    |||.||       
BPUM_1288___y    376 GCTGACCAAAAAGACACAACGGCAACAAAAGCTGACAGCAGCT-------    418

BSNT_02339___    398 TAAGTGCATACGAGAAAAAAGTTGTTGAACTTACAAATGCAGAAAGA---    444
                     |.|.|||||..||.|||.||||.|||||.|||||||    |.|||||   
BPUM_1288___y    419 TGAATGCATTTGAAAAAGAAGTCGTTGAGCTTACAA----ACAAAGAGCG    464

BSNT_02339___    445 --CAAAAACAAGGATTAAAGCCGCTTCAAATTGATGAAACGTTAAGCAAA    492
                       | |||.|||||||||||..|.|||....|||||..||..|||||||||
BPUM_1288___y    465 TGC-AAAGCAAGGATTAAAAGCACTTTCTGTTGATTCAAAATTAAGCAAA    513

BSNT_02339___    493 TCTGCACGAGCAAAATCTCAGGATATGAAGGACAAAAACTACTTTGATCA    542
                     |||||.||.|||||||||||.||||||||.||.||||||||||||..|||
BPUM_1288___y    514 TCTGCTCGCGCAAAATCTCAAGATATGAAAGATAAAAACTACTTTTCTCA    563

BSNT_02339___    543 CCAAAGCCCAACATACGGCTCACCGTTTGAT---ATGATGAAATCTTTCG    589
                     |..|||||||||.|||||.||.||.||||||   ||||.|.||   ||||
BPUM_1288___y    564 CACAAGCCCAACTTACGGATCTCCATTTGATCAAATGAAGCAA---TTCG    610

BSNT_02339___    590 GAATCAGCTACAAAACAGCAGGTGAAAACATTG-CGAAGGGCCAAAAGA-    637
                     |.||||..||||||||||||||||||||||||| |.||||.|  ||||| 
BPUM_1288___y    611 GGATCACTTACAAAACAGCAGGTGAAAACATTGCCCAAGGTC--AAAGAT    658

BSNT_02339___    638 CACCAGAAGAAGTAGTAAAAGCTTGGATGAACAGTGAAGGACACAGA---    684
                     |.||..|||||||.||||..||||||||||||||||||||.||.|||   
BPUM_1288___y    659 CTCCTCAAGAAGTGGTAACTGCTTGGATGAACAGTGAAGGTCATAGAGCC    708

BSNT_02339___    685 ------------AAAAACATTCTAAAC----GGGAGT--GTAATATTAA-    715
                                 ||||||  |.||.||    .||.||  ||.||.|.|| 
BPUM_1288___y    709 AATATCTTAAACAAAAAC--TATACACATATCGGTGTTGGTTATGTGAAA    756

BSNT_02339___    716 -CTGTGTAA-------------------------------    723
                      ||| ||||                               
BPUM_1288___y    757 TCTG-GTAACTACTGGACGCAGCAATTCATCGGAAAATAA    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02339 and BPUM_1288

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
