Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02316 and BPUM_1274

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:47
# Commandline: needle
#    -asequence pep-align/BSNT_02316___ykvV.1.24716.seq
#    -bsequence pep-align/BPUM_1274___spoIVH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02316___ykvV-BPUM_1274___spoIVH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02316___ykvV-BPUM_1274___spoIVH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02316___ykvV
# 2: BPUM_1274___spoIVH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 174
# Identity:      78/174 (44.8%)
# Similarity:   110/174 (63.2%)
# Gaps:          21/174 (12.1%)
# Score: 410.5
# 
#
#=======================================

BSNT_02316___      1 ---------MLTKRLLTIYIMLLGLIAWFPCAAQAEEKQPAVPAVFLMKT     41
                              :|   ::|:.::|:|        ::||.|:|.........|
BPUM_1274___s      1 MNRKYLPASLL---MMTLLLLLIG--------SEAEAKEPVKAPRIEAPT     39

BSNT_02316___     42 IEGEDISIPNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVT     91
                     :.||...||.||:||||||||:|||.||.|||.|......:.|| |.::|
BPUM_1274___s     40 LTGETQMIPPKGKKTILHFWTTWCPSCKMELPVFDQIVKENQSD-VDILT     88

BSNT_02316___     92 VNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIPTSFLLN    141
                     |||:.:||::..|..|:|..|.|||:|||.:|::||:|.||||||:||:|
BPUM_1274___s     89 VNLLGAEQSKHAVAQFVKDKKFTFPVVLDERGDMMKKYQIITIPTTFLIN    138

BSNT_02316___    142 EKGEIEKTKIGPMTAEQLKEWTEE    165
                     |||||.|..:||:|.:|:||||..
BPUM_1274___s    139 EKGEIVKNHVGPLTKKQIKEWTNF    162


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