Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02316 and BPUM_1274
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:47
# Commandline: needle
# -asequence dna-align/BSNT_02316___ykvV.1.24716.seq
# -bsequence dna-align/BPUM_1274___spoIVH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02316___ykvV-BPUM_1274___spoIVH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02316___ykvV-BPUM_1274___spoIVH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02316___ykvV
# 2: BPUM_1274___spoIVH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 560
# Identity: 320/560 (57.1%)
# Similarity: 320/560 (57.1%)
# Gaps: 133/560 (23.8%)
# Score: 823.5
#
#
#=======================================
BSNT_02316___ 1 ATGTTGACGAAGCGCTTGCTTACTATATA-----CATTATGTTATTAGGG 45
|.|||.|| |.|.|||.|| || .|.||.|||
BPUM_1274___s 1 ------ATGAATCG-----TAAATATCTACCCGCCA--GTCTTCTTA--- 34
BSNT_02316___ 46 TTGAT-----TGCATGGTTTC-------CATGTGCGGCACAAGCTGAGGA 83
|||| ||| ||| |||..||.|| .|.|||||.|.
BPUM_1274___s 35 -TGATGACCCTGC-----TTCTATTACTCATAGGCAGC-GAGGCTGAAGC 77
BSNT_02316___ 84 AAAACAGCCTGCTGTTCCCGCTGTTTTTCTTA---TGAAAACGATAGA-- 128
.|||.|||||| ||| .|..||.||||||
BPUM_1274___s 78 GAAAGAGCCTG------------------TTAAGGCGCCAAGGATAGAGG 109
BSNT_02316___ 129 -------------AGGGGA---GGACATCTCGATTCCGAATAAAGGGCAA 162
.||.|| |.|.|| |||||||...|||||..||
BPUM_1274___s 110 CTCCTACATTAACTGGTGAAACGCAGAT---GATTCCGCCAAAAGGAAAA 156
BSNT_02316___ 163 AAAACAATTCTCCATTTTTGGACGTCATGGTGTCCGCCCTGCAAAAAGGA 212
||.||.|||.|.|||||||||||..|||||||.|||.|||||||||.|||
BPUM_1274___s 157 AAGACCATTTTGCATTTTTGGACAACATGGTGCCCGTCCTGCAAAATGGA 206
BSNT_02316___ 213 GCTTCCACAGTTTCAATCGTTTTATGATGCCCATC---------CATCCG 253
|||.|| |||.|| |||| |..||| .|||.|
BPUM_1274___s 207 GCTGCC-----------CGTATT-TGAT-CAGATCGTAAAAGAAAATCAG 243
BSNT_02316___ 254 ACAG-TGT--AAAGCTGGTAACGGTGAATTTA----GTGAATTCGGAACA 296
|..| ||| |.|.|| ||||.||||||||| ||| |.|||||
BPUM_1274___s 244 AGTGATGTTGATATCT--TAACAGTGAATTTACTAGGTG----CTGAACA 287
BSNT_02316___ 297 AAATCAGCAAGTCGTTGAAGACTTTATTAAAG-CAAATAAGCTGACGTTT 345
||.|.|.||.|..||||...|.|||.|.|||| |||| ||..|.||.||.
BPUM_1274___s 288 AAGTAAACATGCGGTTGCTCAATTTGTAAAAGACAAA-AAATTTACATTC 336
BSNT_02316___ 346 CCAATTGTCCTTGACTCA-AAAGGGGAATTGATGAAGGAGTATCATATCA 394
||..|.||.||.|| |.| ..||||||..||||||||.|.||.||.||||
BPUM_1274___s 337 CCGGTCGTACTAGA-TGAGCGAGGGGACATGATGAAGAAATACCAAATCA 385
BSNT_02316___ 395 TCACGATCCCAACATCATTTTTGCTGAATGAAAA--GGGAGAAATTGAAA 442
||||.||.|||||..|.||||||.|.|||||||| ||||||.|.|||||
BPUM_1274___s 386 TCACCATACCAACCACCTTTTTGATAAATGAAAAAGGGGAGATAGTGAAA 435
BSNT_02316___ 443 AAACAAAAATTGGCCCGATGACGGCGGAACAACTGAAGGAATGGACGGAA 492
||.| |..|.||.||..|.|||....|||||.|.||.||.|||||
BPUM_1274___s 436 AATC--ATGTAGGTCCACTAACGAAAAAACAAATCAAAGAGTGGAC---- 479
BSNT_02316___ 493 GAA----TAG 498
||| |||
BPUM_1274___s 480 GAATTTTTAG 489
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