Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_02256 and BPUM_1234

See DNA alignment / Visit BSNT_02256 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:42
# Commandline: needle
#    -asequence pep-align/BSNT_02256___ykoW.1.24716.seq
#    -bsequence pep-align/BPUM_1234___ykoW.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02256___ykoW-BPUM_1234___ykoW.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02256___ykoW-BPUM_1234___ykoW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02256___ykoW
# 2: BPUM_1234___ykoW
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 820
# Identity:     402/820 (49.0%)
# Similarity:   552/820 (67.3%)
# Gaps:          84/820 (10.2%)
# Score: 2073.5
# 
#
#=======================================

BSNT_02256___      0 --------------------------------------------------      0
                                                                       
BPUM_1234___y      1 MTHLTGSYNGWLVFLSIVLAALASYSALQLASRVAQSSGAKKKVWLIVGA     50

BSNT_02256___      1 --MGFGIWSMHFVGMMAVHMEMPMTYEFMPLMAAIGASVSGSFVSLYFVS     48
                       ||.|||||||:||||.|:...:|||...|:.:|.||..||.::.....
BPUM_1234___y     51 LIMGMGIWSMHFIGMMAFHVRAGITYETPLLILSILASFVGSLIAFTICI    100

BSNT_02256___     49 RNILTYYRLLTGSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIA     98
                     :..|:..|||..|:.:|::|.||||:||.:::.|.|.|:|:||.:|..||
BPUM_1234___y    101 QEQLSTRRLLISSITMGSAICSMHYLGMESMANVSISYDPVLFFLSFFIA    150

BSNT_02256___     99 IAASFVSLKIFFDL--AVKKHSEHLIFYKVVSSIVMGIGISGMHYTGMLA    146
                     ..|||.||.:||.|  :.||..:||:  |:|.::|||..::|||||||.|
BPUM_1234___y    151 TIASFFSLHLFFRLHRSGKKQEDHLL--KIVGALVMGGAVAGMHYTGMAA    198

BSNT_02256___    147 AT--FHKD-MAPPGSHMEVQTFHWSIFVTLIIFCIQTLLLFSSHADRKFI    193
                     :|  ||.| .:..|..:|:..|..|||:.|:...:|||::|.::.|.:.:
BPUM_1234___y    199 STMFFHSDGQSSGGGSLELSPFSLSIFIGLMTLIVQTLMIFGAYIDHRIM    248

BSNT_02256___    194 KQSERIKDNEQRFQSLIVHNIDAIFILSLEGDIISSNHAGEEM-------    236
                     ||::::|:|||||||||.||||.|.:||:...::|:|.:|:::       
BPUM_1234___y    249 KQADKLKENEQRFQSLIKHNIDGIIVLSVNRKVLSANDSGKQILKMCNSW    298

BSNT_02256___    237 ----ISKFGFSMHDWRNYTSLKVKRLFEQVKKDKQAMNSDSDLITEKGQF    282
                         :|::......|..:           :.:.|:|:..:::|......:
BPUM_1234___y    299 IGDDVSQYVMPTDMWEEF-----------ISESKKAITREAELKAADRFY    337

BSNT_02256___    283 HLNITLIPVEVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDLPNR    332
                     :.::|.|||.||..|||||::.||:|:|..||||||.|||||:||:||||
BPUM_1234___y    338 YYHVTYIPVHVNNSLDSIYLVLKDLTQQRIAEKEIHVMAHYDALTELPNR    387

BSNT_02256___    333 RHAISHLTKVLNREHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFA    382
                     ||||:||:.||:.:.....:|.|.||||||||:||||||||:||.||:.|
BPUM_1234___y    388 RHAINHLSDVLSAQEETGTSTAVLFLDLNRFKIINDALGHNIGDLLLKAA    437

BSNT_02256___    383 AKRLSSVVPDNGFIARLGGDEFIIILTDANTGTGEADVLARKIIQKFKKP    432
                     |.||:..:||||||||||||||::|..|....|.:.:.|::.||::|::|
BPUM_1234___y    438 ANRLTQCLPDNGFIARLGGDEFLMIFPDMGHDTQKIEQLSQNIIRQFERP    487

BSNT_02256___    433 FKIQDHTLVTSVSIGIAISPKDGTDGLELMKKADMAMYAAKERNKSKYRY    482
                     |.||:|.|:||:||||||||::|.||:|||:|||||||.:|:..:|:|.:
BPUM_1234___y    488 FFIQNHQLITSISIGIAISPQNGKDGMELMRKADMAMYLSKKHKQSRYEF    537

BSNT_02256___    483 YSFSIGNKETVKLNQEMVLREAIENDRFVLHYQPQFSVKKQKMTGAEALI    532
                     ::.|:......:||:|:.||:||:.::||||||||.|.|.::|||.|||:
BPUM_1234___y    538 FTESMERSSEDRLNRELELRDAIQREQFVLHYQPQVSAKTREMTGVEALL    587

BSNT_02256___    533 RLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEACKQARIWHNKGYDL    582
                     |:..|||.|:.|..||.:|||:|||||||:|:||.||:||:.|::.|..:
BPUM_1234___y    588 RMKAPDGSLKSPEAFIELAEESGLIIDIGRWVIDTACRQAKTWYDNGLKI    637

BSNT_02256___    583 SVAINISARQFQSEDLIPLIKDTLNKYQLPPQLLEVEVTESMTMDNLDHS    632
                     .||:|:||:||.|||||.|||.||.||.|.|.|||:||||||||||:..|
BPUM_1234___y    638 PVAVNLSAKQFNSEDLIDLIKLTLKKYDLTPSLLELEVTESMTMDNIKQS    687

BSNT_02256___    633 KKVLSSLKELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTH    682
                     |:||:|||.||:|||||||||||||||||||.||||||||||||:||...
BPUM_1234___y    688 KQVLTSLKHLGVRISIDDFGTGHSSLSYLKDLPIHRLKIDKSFIEDILND    737

BSNT_02256___    683 PKSEQITGAIIAMGHQLSLQVIAEGVENAAQKQLLYEKGCDHLQGFFFSR    732
                     .||||||||||||||||||:|||||||..||.|||..:|||.||||::::
BPUM_1234___y    738 SKSEQITGAIIAMGHQLSLEVIAEGVETFAQAQLLSAQGCDDLQGFYYAK    787

BSNT_02256___    733 PIPPEQFEQFIIEQPSQ---    749
                     |:|....|:||.....|   
BPUM_1234___y    788 PLPASDIEKFIAYPAHQLDT    807


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.