Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02256 and BPUM_1234
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence pep-align/BSNT_02256___ykoW.1.24716.seq
# -bsequence pep-align/BPUM_1234___ykoW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02256___ykoW-BPUM_1234___ykoW.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02256___ykoW-BPUM_1234___ykoW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02256___ykoW
# 2: BPUM_1234___ykoW
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 820
# Identity: 402/820 (49.0%)
# Similarity: 552/820 (67.3%)
# Gaps: 84/820 (10.2%)
# Score: 2073.5
#
#
#=======================================
BSNT_02256___ 0 -------------------------------------------------- 0
BPUM_1234___y 1 MTHLTGSYNGWLVFLSIVLAALASYSALQLASRVAQSSGAKKKVWLIVGA 50
BSNT_02256___ 1 --MGFGIWSMHFVGMMAVHMEMPMTYEFMPLMAAIGASVSGSFVSLYFVS 48
||.|||||||:||||.|:...:|||...|:.:|.||..||.::.....
BPUM_1234___y 51 LIMGMGIWSMHFIGMMAFHVRAGITYETPLLILSILASFVGSLIAFTICI 100
BSNT_02256___ 49 RNILTYYRLLTGSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIA 98
:..|:..|||..|:.:|::|.||||:||.:::.|.|.|:|:||.:|..||
BPUM_1234___y 101 QEQLSTRRLLISSITMGSAICSMHYLGMESMANVSISYDPVLFFLSFFIA 150
BSNT_02256___ 99 IAASFVSLKIFFDL--AVKKHSEHLIFYKVVSSIVMGIGISGMHYTGMLA 146
..|||.||.:||.| :.||..:||: |:|.::|||..::|||||||.|
BPUM_1234___y 151 TIASFFSLHLFFRLHRSGKKQEDHLL--KIVGALVMGGAVAGMHYTGMAA 198
BSNT_02256___ 147 AT--FHKD-MAPPGSHMEVQTFHWSIFVTLIIFCIQTLLLFSSHADRKFI 193
:| ||.| .:..|..:|:..|..|||:.|:...:|||::|.::.|.:.:
BPUM_1234___y 199 STMFFHSDGQSSGGGSLELSPFSLSIFIGLMTLIVQTLMIFGAYIDHRIM 248
BSNT_02256___ 194 KQSERIKDNEQRFQSLIVHNIDAIFILSLEGDIISSNHAGEEM------- 236
||::::|:|||||||||.||||.|.:||:...::|:|.:|:::
BPUM_1234___y 249 KQADKLKENEQRFQSLIKHNIDGIIVLSVNRKVLSANDSGKQILKMCNSW 298
BSNT_02256___ 237 ----ISKFGFSMHDWRNYTSLKVKRLFEQVKKDKQAMNSDSDLITEKGQF 282
:|::......|..: :.:.|:|:..:::|......:
BPUM_1234___y 299 IGDDVSQYVMPTDMWEEF-----------ISESKKAITREAELKAADRFY 337
BSNT_02256___ 283 HLNITLIPVEVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDLPNR 332
:.::|.|||.||..|||||::.||:|:|..||||||.|||||:||:||||
BPUM_1234___y 338 YYHVTYIPVHVNNSLDSIYLVLKDLTQQRIAEKEIHVMAHYDALTELPNR 387
BSNT_02256___ 333 RHAISHLTKVLNREHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFA 382
||||:||:.||:.:.....:|.|.||||||||:||||||||:||.||:.|
BPUM_1234___y 388 RHAINHLSDVLSAQEETGTSTAVLFLDLNRFKIINDALGHNIGDLLLKAA 437
BSNT_02256___ 383 AKRLSSVVPDNGFIARLGGDEFIIILTDANTGTGEADVLARKIIQKFKKP 432
|.||:..:||||||||||||||::|..|....|.:.:.|::.||::|::|
BPUM_1234___y 438 ANRLTQCLPDNGFIARLGGDEFLMIFPDMGHDTQKIEQLSQNIIRQFERP 487
BSNT_02256___ 433 FKIQDHTLVTSVSIGIAISPKDGTDGLELMKKADMAMYAAKERNKSKYRY 482
|.||:|.|:||:||||||||::|.||:|||:|||||||.:|:..:|:|.:
BPUM_1234___y 488 FFIQNHQLITSISIGIAISPQNGKDGMELMRKADMAMYLSKKHKQSRYEF 537
BSNT_02256___ 483 YSFSIGNKETVKLNQEMVLREAIENDRFVLHYQPQFSVKKQKMTGAEALI 532
::.|:......:||:|:.||:||:.::||||||||.|.|.::|||.|||:
BPUM_1234___y 538 FTESMERSSEDRLNRELELRDAIQREQFVLHYQPQVSAKTREMTGVEALL 587
BSNT_02256___ 533 RLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEACKQARIWHNKGYDL 582
|:..|||.|:.|..||.:|||:|||||||:|:||.||:||:.|::.|..:
BPUM_1234___y 588 RMKAPDGSLKSPEAFIELAEESGLIIDIGRWVIDTACRQAKTWYDNGLKI 637
BSNT_02256___ 583 SVAINISARQFQSEDLIPLIKDTLNKYQLPPQLLEVEVTESMTMDNLDHS 632
.||:|:||:||.|||||.|||.||.||.|.|.|||:||||||||||:..|
BPUM_1234___y 638 PVAVNLSAKQFNSEDLIDLIKLTLKKYDLTPSLLELEVTESMTMDNIKQS 687
BSNT_02256___ 633 KKVLSSLKELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTH 682
|:||:|||.||:|||||||||||||||||||.||||||||||||:||...
BPUM_1234___y 688 KQVLTSLKHLGVRISIDDFGTGHSSLSYLKDLPIHRLKIDKSFIEDILND 737
BSNT_02256___ 683 PKSEQITGAIIAMGHQLSLQVIAEGVENAAQKQLLYEKGCDHLQGFFFSR 732
.||||||||||||||||||:|||||||..||.|||..:|||.||||::::
BPUM_1234___y 738 SKSEQITGAIIAMGHQLSLEVIAEGVETFAQAQLLSAQGCDDLQGFYYAK 787
BSNT_02256___ 733 PIPPEQFEQFIIEQPSQ--- 749
|:|....|:||.....|
BPUM_1234___y 788 PLPASDIEKFIAYPAHQLDT 807
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