Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02256 and BPUM_1234

See Amino acid alignment / Visit BSNT_02256 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:43
# Commandline: needle
#    -asequence dna-align/BSNT_02256___ykoW.1.24716.seq
#    -bsequence dna-align/BPUM_1234___ykoW.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02256___ykoW-BPUM_1234___ykoW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02256___ykoW-BPUM_1234___ykoW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02256___ykoW
# 2: BPUM_1234___ykoW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2653
# Identity:    1475/2653 (55.6%)
# Similarity:  1475/2653 (55.6%)
# Gaps:         632/2653 (23.8%)
# Score: 3765.5
# 
#
#=======================================

BSNT_02256___      0 --------------------------------------------------      0
                                                                       
BPUM_1234___y      1 ATGACCCATTTAACAGGAAGCTACAATGGATGGCTTGTCTTTCTGTCAAT     50

BSNT_02256___      0 --------------------------------------------------      0
                                                                       
BPUM_1234___y     51 CGTACTCGCCGCTCTCGCCTCCTACTCAGCTCTTCAATTAGCCAGCCGAG    100

BSNT_02256___      0 --------------------------------------------------      0
                                                                       
BPUM_1234___y    101 TGGCACAGTCAAGCGGTGCGAAGAAAAAGGTATGGCTGATCGTTGGTGCC    150

BSNT_02256___      1 ------ATGGGATTCGGTATTTGGTCAATGCATTTTGTAGGGATGATGGC     44
                           ||||||.|.||.||.|||||.|||||||||.|.||.||||||||
BPUM_1234___y    151 TTGATCATGGGAATGGGGATATGGTCGATGCATTTTATTGGCATGATGGC    200

BSNT_02256___     45 CGTCCATATG-GAAATGCCG--ATGACATATGAA---------TTCATGC     82
                     ..|.||..|| |   |||.|  ||.|||||||||         .||||  
BPUM_1234___y    201 ATTTCACGTGCG---TGCTGGCATCACATATGAAACACCCTTGCTCAT--    245

BSNT_02256___     83 CTTTAATGGCAGCCATTGGCGCATCTGTT-TCGGGATCATTTGTGTCATT    131
                      |||      |.|.|||...||||||.|| || |||||.||..|..||||
BPUM_1234___y    246 -TTT------ATCGATTTTGGCATCTTTTGTC-GGATCCTTGATCGCATT    287

BSNT_02256___    132 ----ATATTTTGTCAGCCGGAACA-TTCT-TACATATTACAGACTGCTTA    175
                         ||||....|||   .||||| .||| .|||      ||||.|||  
BPUM_1234___y    288 CACAATATGCATTCA---AGAACAGCTCTCCACA------AGACGGCT--    326

BSNT_02256___    176 CCGGATCAGTTGTGC--------TTGGCGCATCTA-TTGCTTCTATGCAC    216
                        |.|||.|.||.|        |.||..||.||| ||||..| |||||.
BPUM_1234___y    327 ---GCTCATTAGTTCAATCACCATGGGTTCAGCTATTTGCAGC-ATGCAT    372

BSNT_02256___    217 TATATCGGAATG---TC---TGCCA---TTTCCCGGGTAATGATTATTTA    257
                     ||..|.||||||   ||   .||||   |.|||         ||.|..||
BPUM_1234___y    373 TACCTTGGAATGGAATCAATGGCCAATGTCTCC---------ATCAGCTA    413

BSNT_02256___    258 CGAACCGAT--TTTATTTACAGTTTCAATTATCATTG---CGATTGCAGC    302
                     .||.||..|  |.|.|||.|  ||||..||.||||||   ||||   |||
BPUM_1234___y    414 TGATCCAGTCCTCTTTTTTC--TTTCGTTTTTCATTGCTACGAT---AGC    458

BSNT_02256___    303 CTCTTTCGTCTCGTTAAAAATATTCTTT-GACT---TGG--CCGTAAAAA    346
                     .||||||.|.|||.|..|..|.||.||| |.||   |.|  |||.|||||
BPUM_1234___y    459 GTCTTTCTTTTCGCTTCATCTCTTTTTTCGGCTCCATCGATCCGGAAAAA    508

BSNT_02256___    347 AACATTCTGAGCATCTTATATTCTATAAAGTCGTCAGTTCAATTGTAATG    396
                     ||||....||.|||||..||      |||.|.||..||.||.||||.|||
BPUM_1234___y    509 AACAGGAGGATCATCTGTTA------AAAATAGTTGGTGCACTTGTGATG    552

BSNT_02256___    397 GGCATTGGG---ATTTCGGGCATGCACTACACAGGGATGCTTGCGGCAAC    443
                     |||   |||   .||.|.||.|||||.||.||.||.|||..|||..|.||
BPUM_1234___y    553 GGC---GGGGCTGTTGCTGGGATGCATTATACCGGTATGGCTGCTTCTAC    599

BSNT_02256___    444 -------TTTCCATAAGGACATGGCTCCG----CCCGGAAGCCATATGGA    482
                            ||||..|.||   |||| ||.|    ||.||         ||.
BPUM_1234___y    600 TATGTTTTTTCATTCAG---ATGG-TCAGTCTTCCGGG---------GGT    636

BSNT_02256___    483 GGTGC-----AA-----ACGTTTCA-TTGGTCAATTTTTGTTACTTTAAT    521
                     |||.|     ||     ||..|||| |..|||.|||||..|...||||||
BPUM_1234___y    637 GGTTCTCTTGAATTATCACCATTCAGTCTGTCGATTTTCATCGGTTTAAT    686

BSNT_02256___    522 --TATTTTTTGTATCCAAACGTTATTGTTATTCAGTTCCCATGCAGAT--    567
                       .|.|..|||  ||||.||..|..||.|.||..||.||.||...|||  
BPUM_1234___y    687 GACACTGATTG--TCCAGACACTGATGATTTTTGGTGCCTATATCGATCA    734

BSNT_02256___    568 -CGAAAGTTTATTAAACAG--AGCGAACGCATAAAGGATAACGAACAGCG    614
                      ||||   |.||.||.|||  ||..|| || |.|||||.||.||||||||
BPUM_1234___y    735 CCGAA---TCATGAAGCAGGCAGATAA-GC-TCAAGGAAAATGAACAGCG    779

BSNT_02256___    615 ATTTCAGTCTTTAATCGTCCACAATATTGATGCAATTTTTATTTTATC--    662
                     ||||||.||..|.|||...||.|||||.||||.||||.|..|.|||||  
BPUM_1234___y    780 ATTTCAATCGCTCATCAAACATAATATCGATGGAATTATCGTGTTATCGG    829

BSNT_02256___    663 ---ATTAGAAGGAGACATAATATCTTCCAATCACGCTGGTGAGGAAAT--    707
                        ||...||||     |..|.|||.|.||..||.|.|||.|..||||  
BPUM_1234___y    830 TCAATCGAAAGG-----TGCTTTCTGCAAACGACTCAGGTAAACAAATCC    874

BSNT_02256___    708 ----GATCAGCAAAT-TTGGCT-----------TCAG---------CATG    732
                         .||..||||.| ||||.|           ||||         ||||
BPUM_1234___y    875 TAAAAATGTGCAATTCTTGGATTGGTGACGATGTCAGCCAATACGTCATG    924

BSNT_02256___    733 CATGACTGGAGGAATTACACATCACTGAAG--GTTAAGCGCCTTTTTGAG    780
                     | .|||||          ||||....||||  .|||      |||.||||
BPUM_1234___y    925 C-CGACTG----------ACATGTGGGAAGAATTTA------TTTCTGAG    957

BSNT_02256___    781 -CAAGTTAAAAAAG--ATAAAC-----AAGC--GATGAACAGCGATAGC-    819
                      ||    ||.||||  || .||     ||||  .||.||.|||   ||| 
BPUM_1234___y    958 TCA----AAGAAAGCCAT-CACTCGTGAAGCAGAATTAAAAGC---AGCA    999

BSNT_02256___    820 GATC----------TTATCACTGAAAAAGGCCAGTTTCACTTAAATATTA    859
                     ||||          ||||||              |.|||||||       
BPUM_1234___y   1000 GATCGCTTTTATTATTATCA--------------TGTCACTTA-------   1028

BSNT_02256___    860 CGCTTATACCTGTTGAGGTCAA----TCAGGAACTAGACAGCATTTATGT    905
                         .|||||||||.|.|||||    ||    .||.|||||.||||||  
BPUM_1234___y   1029 ----CATACCTGTTCATGTCAACAATTC----GCTTGACAGTATTTAT--   1068

BSNT_02256___    906 CATTTGT----AAAGACATGACGAAGCAGTAC--AAAGCAGAAAAAGAAA    949
                       .||||    |||||..|.|||.||||  ||  |..|||||||||||||
BPUM_1234___y   1069 --CTTGTCTTAAAAGATTTAACGCAGCA--ACGGATTGCAGAAAAAGAAA   1114

BSNT_02256___    950 TCCATAGAATGGCTCATTATGATTCGCTTACAGACTTACCTAACAGAAGG    999
                     |.|||...|||||.|||||||||.||.|.||.||..|.|||||..|..|.
BPUM_1234___y   1115 TTCATGTCATGGCACATTATGATGCGTTAACTGAGCTCCCTAATCGGCGC   1164

BSNT_02256___   1000 CATGCCATCTCTCATCTAACAAAGGTGCT----------GAATCG-CGAG   1038
                     |||||||||...|||.|||...|.||.||          |||..| ||.|
BPUM_1234___y   1165 CATGCCATCAACCATTTAAGTGATGTTCTCTCCGCTCAAGAAGAGACGGG   1214

BSNT_02256___   1039 CATTCCTTGCATTATAAC-ACTGTTGTATTCTTTCTTGACTTAAACCGGT   1087
                                 ||.|.| ||.|.|||..|.||||||||.||.||.||.|
BPUM_1234___y   1215 ------------TACATCGACGGCTGTTCTTTTTCTTGATTTGAATCGTT   1252

BSNT_02256___   1088 TTAAAGTGATTAACGATGCATTAGGGCATAATGTCGGTGATCAATTGCTT   1137
                     |||||.|.|||||.||||||.|.||.|||||..|.||.|   |.||.|||
BPUM_1234___y   1253 TTAAAATTATTAATGATGCACTTGGTCATAACATAGGGG---ACTTACTT   1299

BSNT_02256___   1138 CAGTTT------GCGGCTAAACGTTTGTC---ATCTGTAGTCCCTGATAA   1178
                     |   ||      ||.||.||..|..||.|   ||.|.||   ||.||.||
BPUM_1234___y   1300 C---TTAAAGCAGCTGCGAACAGACTGACGCAATGTTTA---CCAGACAA   1343

BSNT_02256___   1179 CGGATTTATCGCCCGTCTTGGCGGTGATGAATTTATTATTATATTAACAG   1228
                     |||.|||||.||..|.||.||.||.|||||||||.|.||.||.||..|.|
BPUM_1234___y   1344 CGGCTTTATAGCAAGACTAGGTGGGGATGAATTTTTAATGATCTTCCCTG   1393

BSNT_02256___   1229 A----CGCCA----ATACAG------GAACAGGCGAAGCAGATGTTTTAG   1264
                     |    .|.||    |.||||      |||||            |.|||..
BPUM_1234___y   1394 ATATGGGGCATGACACACAGAAAATTGAACA------------GCTTTCT   1431

BSNT_02256___   1265 CAAGAAAAATTATCCAAAAATTCAAAAAACC---TTTCA---AGATTCA-   1307
                     ||  |||.||.||.|...||||..|....||   |||||   |||.||| 
BPUM_1234___y   1432 CA--AAATATCATTCGTCAATTTGAGCGTCCTTTTTTCATTCAGAATCAT   1479

BSNT_02256___   1308 -AGATCACACCCTTGTCACATCTGTCAGTATCGGGATTGCGATATCTCCA   1356
                      ||.|||        |.||||||.||||.||.||.|||||.||.||.||.
BPUM_1234___y   1480 CAGCTCA--------TTACATCTATCAGCATTGGAATTGCTATTTCACCT   1521

BSNT_02256___   1357 AAAGACGGGACTGATGGCCTTGAATTGATGAAAAAGGCTGATATGGCGAT   1406
                     .|..|.||.|..|||||..|.|||||.||||..||.||.|||||||||||
BPUM_1234___y   1522 CAGAATGGCAAAGATGGGATGGAATTAATGAGGAAAGCCGATATGGCGAT   1571

BSNT_02256___   1407 GTATGCGGCTAAAGAACGAAACAAAAGCAAATACAGATACTATTCTTTTT   1456
                     ||||....|||||     |||||.||||||| .|.|.||..|  .|||||
BPUM_1234___y   1572 GTATTTATCTAAA-----AAACATAAGCAAA-GCCGTTATGA--GTTTTT   1613

BSNT_02256___   1457 CA-------ATTGGCAACA-------AAGAAACCGTCAAGCTTAACCAAG   1492
                     ||       |.|||.||.|       ||||      ||.|.|.||||.||
BPUM_1234___y   1614 CACCGAATCAATGGAAAGATCAAGTGAAGA------CAGGTTGAACCGAG   1657

BSNT_02256___   1493 AGAT---GGTACTCAGAGAAGCAATCGAAAACGATAGA-TTTGT-CTTGC   1537
                     ||.|   |.|||   |.||.||.||..|||..|| |.| ||.|| ||| |
BPUM_1234___y   1658 AGCTTGAGTTAC---GGGATGCCATTCAAAGGGA-ACAGTTCGTGCTT-C   1702

BSNT_02256___   1538 ATTATCAGCCGCAATTCAGTGTAAAAAAACAAAAAATGACAGGAGCAGAA   1587
                     ||||.|||||.|||.|.||||..||||.|..|.|.|||||.||.|.||||
BPUM_1234___y   1703 ATTACCAGCCTCAAGTGAGTGCGAAAACAAGAGAGATGACTGGCGTAGAA   1752

BSNT_02256___   1588 GCACTGATACGCCTTGTGA---CACCAGACGGGCAACTGCGT-----CCG   1629
                     ||.||..||.|   ..|||   ||||.||.||     |.|||     .|.
BPUM_1234___y   1753 GCTCTTCTAAG---AATGAAAGCACCCGATGG-----TTCGTTAAAATCA   1794

BSNT_02256___   1630 CCCGGAGAATTTATCGGTGTCGCAGAAGAAACGGGACTTATTATTGATAT   1679
                     ||.|..|..|||||.|...|.|||||.|||.|.||.||.||.||.|||||
BPUM_1234___y   1795 CCTGAGGCTTTTATTGAACTGGCAGAGGAATCAGGTCTGATCATCGATAT   1844

BSNT_02256___   1680 CGGAAAGTGGATTATAGATGAAGCATGCAAGCAGGCAAGGATTTGGCACA   1729
                     .||.|..|||.|.||.|||...|||||||.||||||.|..|..|||.|..
BPUM_1234___y   1845 TGGCAGATGGGTCATTGATACCGCATGCAGGCAGGCTAAAACGTGGTATG   1894

BSNT_02256___   1730 ATAAAGGCTATG-ATCTTTCTGTCGCCATTAATATTTCCGCCAGACAGTT   1778
                     ||||.|| |.|| |..||.||||.||..|||||.|.||.||.|.|||.||
BPUM_1234___y   1895 ATAATGG-TCTGAAAATTCCTGTGGCTGTTAATTTATCTGCGAAACAATT   1943

BSNT_02256___   1779 CCAATCCGAAGATC-----TGATTCCCCTCATCAAGGATACGCTTAATAA   1823
                     ..|.||.||||| |     |||||    |.||.|||...||.||.||.||
BPUM_1234___y   1944 TAATTCTGAAGA-CTTAATTGATT----TGATTAAGCTAACACTGAAAAA   1988

BSNT_02256___   1824 ATACCAGCTTCCTCCG-CAGCTTCTTGAAGTGGAGGTGACGGAAAGCATG   1872
                     ||||.|.||..|.||| || ||.||.||..|.||.||.||.|||||.|||
BPUM_1234___y   1989 ATACGATCTGACACCGTCA-CTGCTCGAGCTTGAAGTCACAGAAAGTATG   2037

BSNT_02256___   1873 ACAATGGACAATCTCGATCACTCCAAAAAGGTTTTGTCATCCCTTAAAGA   1922
                     ||||||||||||.||.|.||.||.|||.|.||..||.|.||.||.|||.|
BPUM_1234___y   2038 ACAATGGACAATATCAAGCAATCAAAACAAGTGCTGACGTCACTGAAACA   2087

BSNT_02256___   1923 ATTAGGAATCAGAATCAGTATTGACGATTTCGGTACTGGTCACAGCTCCC   1972
                     ..||||..|..|.||.||||||||.||.||||||||.|||||.||||||.
BPUM_1234___y   2088 TCTAGGCGTTCGCATTAGTATTGATGACTTCGGTACAGGTCATAGCTCCT   2137

BSNT_02256___   1973 TTAGCTATTTGAAGGACTTCCCGATTCACAGGCTGAAGATTGACAAATCA   2022
                     |.||||||||.|||||.||.||.|||||..|.||.||.||.||||||||.
BPUM_1234___y   2138 TAAGCTATTTAAAGGATTTACCCATTCATCGTCTAAAAATCGACAAATCC   2187

BSNT_02256___   2023 TTTATTGACGATATTCAGACCCATCCTAAATCAGAGCAAATTACCGGAGC   2072
                     ||.|||||.||||||...|...||.|.|||||.||.||||||||.||.||
BPUM_1234___y   2188 TTCATTGAAGATATTTTAAATGATTCAAAATCTGAACAAATTACAGGTGC   2237

BSNT_02256___   2073 TATTATTGCCATGGGGCATCAGCTGTCT-TTGCAGGTGATTGCCGAAGGT   2121
                     ||||||.||.|||||.|||||.||.||| ||| |.||.||.||.||||||
BPUM_1234___y   2238 TATTATCGCGATGGGACATCAACTATCTCTTG-AAGTCATAGCAGAAGGT   2286

BSNT_02256___   2122 GTGGAAA---ATGCAGCTCAAAAGCAGCTTCTATATGAAAAAGGCTGCGA   2168
                     ||.||||   .||||   |||..|||||||.|||.||.|.||||.|||||
BPUM_1234___y   2287 GTTGAAACCTTTGCA---CAAGCGCAGCTTTTATCTGCACAAGGATGCGA   2333

BSNT_02256___   2169 CCATTTGCAGGGCTTCTTTTTCAGCAGGCCAATACC--TCCGG--AACAA   2214
                     |.|..||||.|||||.|.||     |.||.||..||  |||.|  |.|.|
BPUM_1234___y   2334 CGACCTGCAAGGCTTTTATT-----ATGCAAAGCCCCTTCCAGCAAGCGA   2378

BSNT_02256___   2215 T-TCGAACAATTCAT----TATTGAACAGCCGTCGCA------------A   2247
                     | |||||.|||||||    |||       ||..||||            |
BPUM_1234___y   2379 TATCGAAAAATTCATTGCCTAT-------CCAGCGCATCAGCTGGACACA   2421

BSNT_02256___   2248 TAA   2250
                     |||
BPUM_1234___y   2422 TAA   2424


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