Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02256 and BPUM_1234
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_02256___ykoW.1.24716.seq
# -bsequence dna-align/BPUM_1234___ykoW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02256___ykoW-BPUM_1234___ykoW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02256___ykoW-BPUM_1234___ykoW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02256___ykoW
# 2: BPUM_1234___ykoW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2653
# Identity: 1475/2653 (55.6%)
# Similarity: 1475/2653 (55.6%)
# Gaps: 632/2653 (23.8%)
# Score: 3765.5
#
#
#=======================================
BSNT_02256___ 0 -------------------------------------------------- 0
BPUM_1234___y 1 ATGACCCATTTAACAGGAAGCTACAATGGATGGCTTGTCTTTCTGTCAAT 50
BSNT_02256___ 0 -------------------------------------------------- 0
BPUM_1234___y 51 CGTACTCGCCGCTCTCGCCTCCTACTCAGCTCTTCAATTAGCCAGCCGAG 100
BSNT_02256___ 0 -------------------------------------------------- 0
BPUM_1234___y 101 TGGCACAGTCAAGCGGTGCGAAGAAAAAGGTATGGCTGATCGTTGGTGCC 150
BSNT_02256___ 1 ------ATGGGATTCGGTATTTGGTCAATGCATTTTGTAGGGATGATGGC 44
||||||.|.||.||.|||||.|||||||||.|.||.||||||||
BPUM_1234___y 151 TTGATCATGGGAATGGGGATATGGTCGATGCATTTTATTGGCATGATGGC 200
BSNT_02256___ 45 CGTCCATATG-GAAATGCCG--ATGACATATGAA---------TTCATGC 82
..|.||..|| | |||.| ||.||||||||| .||||
BPUM_1234___y 201 ATTTCACGTGCG---TGCTGGCATCACATATGAAACACCCTTGCTCAT-- 245
BSNT_02256___ 83 CTTTAATGGCAGCCATTGGCGCATCTGTT-TCGGGATCATTTGTGTCATT 131
||| |.|.|||...||||||.|| || |||||.||..|..||||
BPUM_1234___y 246 -TTT------ATCGATTTTGGCATCTTTTGTC-GGATCCTTGATCGCATT 287
BSNT_02256___ 132 ----ATATTTTGTCAGCCGGAACA-TTCT-TACATATTACAGACTGCTTA 175
||||....||| .||||| .||| .||| ||||.|||
BPUM_1234___y 288 CACAATATGCATTCA---AGAACAGCTCTCCACA------AGACGGCT-- 326
BSNT_02256___ 176 CCGGATCAGTTGTGC--------TTGGCGCATCTA-TTGCTTCTATGCAC 216
|.|||.|.||.| |.||..||.||| ||||..| |||||.
BPUM_1234___y 327 ---GCTCATTAGTTCAATCACCATGGGTTCAGCTATTTGCAGC-ATGCAT 372
BSNT_02256___ 217 TATATCGGAATG---TC---TGCCA---TTTCCCGGGTAATGATTATTTA 257
||..|.|||||| || .|||| |.||| ||.|..||
BPUM_1234___y 373 TACCTTGGAATGGAATCAATGGCCAATGTCTCC---------ATCAGCTA 413
BSNT_02256___ 258 CGAACCGAT--TTTATTTACAGTTTCAATTATCATTG---CGATTGCAGC 302
.||.||..| |.|.|||.| ||||..||.|||||| |||| |||
BPUM_1234___y 414 TGATCCAGTCCTCTTTTTTC--TTTCGTTTTTCATTGCTACGAT---AGC 458
BSNT_02256___ 303 CTCTTTCGTCTCGTTAAAAATATTCTTT-GACT---TGG--CCGTAAAAA 346
.||||||.|.|||.|..|..|.||.||| |.|| |.| |||.|||||
BPUM_1234___y 459 GTCTTTCTTTTCGCTTCATCTCTTTTTTCGGCTCCATCGATCCGGAAAAA 508
BSNT_02256___ 347 AACATTCTGAGCATCTTATATTCTATAAAGTCGTCAGTTCAATTGTAATG 396
||||....||.|||||..|| |||.|.||..||.||.||||.|||
BPUM_1234___y 509 AACAGGAGGATCATCTGTTA------AAAATAGTTGGTGCACTTGTGATG 552
BSNT_02256___ 397 GGCATTGGG---ATTTCGGGCATGCACTACACAGGGATGCTTGCGGCAAC 443
||| ||| .||.|.||.|||||.||.||.||.|||..|||..|.||
BPUM_1234___y 553 GGC---GGGGCTGTTGCTGGGATGCATTATACCGGTATGGCTGCTTCTAC 599
BSNT_02256___ 444 -------TTTCCATAAGGACATGGCTCCG----CCCGGAAGCCATATGGA 482
||||..|.|| |||| ||.| ||.|| ||.
BPUM_1234___y 600 TATGTTTTTTCATTCAG---ATGG-TCAGTCTTCCGGG---------GGT 636
BSNT_02256___ 483 GGTGC-----AA-----ACGTTTCA-TTGGTCAATTTTTGTTACTTTAAT 521
|||.| || ||..|||| |..|||.|||||..|...||||||
BPUM_1234___y 637 GGTTCTCTTGAATTATCACCATTCAGTCTGTCGATTTTCATCGGTTTAAT 686
BSNT_02256___ 522 --TATTTTTTGTATCCAAACGTTATTGTTATTCAGTTCCCATGCAGAT-- 567
.|.|..||| ||||.||..|..||.|.||..||.||.||...|||
BPUM_1234___y 687 GACACTGATTG--TCCAGACACTGATGATTTTTGGTGCCTATATCGATCA 734
BSNT_02256___ 568 -CGAAAGTTTATTAAACAG--AGCGAACGCATAAAGGATAACGAACAGCG 614
|||| |.||.||.||| ||..|| || |.|||||.||.||||||||
BPUM_1234___y 735 CCGAA---TCATGAAGCAGGCAGATAA-GC-TCAAGGAAAATGAACAGCG 779
BSNT_02256___ 615 ATTTCAGTCTTTAATCGTCCACAATATTGATGCAATTTTTATTTTATC-- 662
||||||.||..|.|||...||.|||||.||||.||||.|..|.|||||
BPUM_1234___y 780 ATTTCAATCGCTCATCAAACATAATATCGATGGAATTATCGTGTTATCGG 829
BSNT_02256___ 663 ---ATTAGAAGGAGACATAATATCTTCCAATCACGCTGGTGAGGAAAT-- 707
||...|||| |..|.|||.|.||..||.|.|||.|..||||
BPUM_1234___y 830 TCAATCGAAAGG-----TGCTTTCTGCAAACGACTCAGGTAAACAAATCC 874
BSNT_02256___ 708 ----GATCAGCAAAT-TTGGCT-----------TCAG---------CATG 732
.||..||||.| ||||.| |||| ||||
BPUM_1234___y 875 TAAAAATGTGCAATTCTTGGATTGGTGACGATGTCAGCCAATACGTCATG 924
BSNT_02256___ 733 CATGACTGGAGGAATTACACATCACTGAAG--GTTAAGCGCCTTTTTGAG 780
| .||||| ||||....|||| .||| |||.||||
BPUM_1234___y 925 C-CGACTG----------ACATGTGGGAAGAATTTA------TTTCTGAG 957
BSNT_02256___ 781 -CAAGTTAAAAAAG--ATAAAC-----AAGC--GATGAACAGCGATAGC- 819
|| ||.|||| || .|| |||| .||.||.||| |||
BPUM_1234___y 958 TCA----AAGAAAGCCAT-CACTCGTGAAGCAGAATTAAAAGC---AGCA 999
BSNT_02256___ 820 GATC----------TTATCACTGAAAAAGGCCAGTTTCACTTAAATATTA 859
|||| |||||| |.|||||||
BPUM_1234___y 1000 GATCGCTTTTATTATTATCA--------------TGTCACTTA------- 1028
BSNT_02256___ 860 CGCTTATACCTGTTGAGGTCAA----TCAGGAACTAGACAGCATTTATGT 905
.|||||||||.|.||||| || .||.|||||.||||||
BPUM_1234___y 1029 ----CATACCTGTTCATGTCAACAATTC----GCTTGACAGTATTTAT-- 1068
BSNT_02256___ 906 CATTTGT----AAAGACATGACGAAGCAGTAC--AAAGCAGAAAAAGAAA 949
.|||| |||||..|.|||.|||| || |..|||||||||||||
BPUM_1234___y 1069 --CTTGTCTTAAAAGATTTAACGCAGCA--ACGGATTGCAGAAAAAGAAA 1114
BSNT_02256___ 950 TCCATAGAATGGCTCATTATGATTCGCTTACAGACTTACCTAACAGAAGG 999
|.|||...|||||.|||||||||.||.|.||.||..|.|||||..|..|.
BPUM_1234___y 1115 TTCATGTCATGGCACATTATGATGCGTTAACTGAGCTCCCTAATCGGCGC 1164
BSNT_02256___ 1000 CATGCCATCTCTCATCTAACAAAGGTGCT----------GAATCG-CGAG 1038
|||||||||...|||.|||...|.||.|| |||..| ||.|
BPUM_1234___y 1165 CATGCCATCAACCATTTAAGTGATGTTCTCTCCGCTCAAGAAGAGACGGG 1214
BSNT_02256___ 1039 CATTCCTTGCATTATAAC-ACTGTTGTATTCTTTCTTGACTTAAACCGGT 1087
||.|.| ||.|.|||..|.||||||||.||.||.||.|
BPUM_1234___y 1215 ------------TACATCGACGGCTGTTCTTTTTCTTGATTTGAATCGTT 1252
BSNT_02256___ 1088 TTAAAGTGATTAACGATGCATTAGGGCATAATGTCGGTGATCAATTGCTT 1137
|||||.|.|||||.||||||.|.||.|||||..|.||.| |.||.|||
BPUM_1234___y 1253 TTAAAATTATTAATGATGCACTTGGTCATAACATAGGGG---ACTTACTT 1299
BSNT_02256___ 1138 CAGTTT------GCGGCTAAACGTTTGTC---ATCTGTAGTCCCTGATAA 1178
| || ||.||.||..|..||.| ||.|.|| ||.||.||
BPUM_1234___y 1300 C---TTAAAGCAGCTGCGAACAGACTGACGCAATGTTTA---CCAGACAA 1343
BSNT_02256___ 1179 CGGATTTATCGCCCGTCTTGGCGGTGATGAATTTATTATTATATTAACAG 1228
|||.|||||.||..|.||.||.||.|||||||||.|.||.||.||..|.|
BPUM_1234___y 1344 CGGCTTTATAGCAAGACTAGGTGGGGATGAATTTTTAATGATCTTCCCTG 1393
BSNT_02256___ 1229 A----CGCCA----ATACAG------GAACAGGCGAAGCAGATGTTTTAG 1264
| .|.|| |.|||| ||||| |.|||..
BPUM_1234___y 1394 ATATGGGGCATGACACACAGAAAATTGAACA------------GCTTTCT 1431
BSNT_02256___ 1265 CAAGAAAAATTATCCAAAAATTCAAAAAACC---TTTCA---AGATTCA- 1307
|| |||.||.||.|...||||..|....|| ||||| |||.|||
BPUM_1234___y 1432 CA--AAATATCATTCGTCAATTTGAGCGTCCTTTTTTCATTCAGAATCAT 1479
BSNT_02256___ 1308 -AGATCACACCCTTGTCACATCTGTCAGTATCGGGATTGCGATATCTCCA 1356
||.||| |.||||||.||||.||.||.|||||.||.||.||.
BPUM_1234___y 1480 CAGCTCA--------TTACATCTATCAGCATTGGAATTGCTATTTCACCT 1521
BSNT_02256___ 1357 AAAGACGGGACTGATGGCCTTGAATTGATGAAAAAGGCTGATATGGCGAT 1406
.|..|.||.|..|||||..|.|||||.||||..||.||.|||||||||||
BPUM_1234___y 1522 CAGAATGGCAAAGATGGGATGGAATTAATGAGGAAAGCCGATATGGCGAT 1571
BSNT_02256___ 1407 GTATGCGGCTAAAGAACGAAACAAAAGCAAATACAGATACTATTCTTTTT 1456
||||....||||| |||||.||||||| .|.|.||..| .|||||
BPUM_1234___y 1572 GTATTTATCTAAA-----AAACATAAGCAAA-GCCGTTATGA--GTTTTT 1613
BSNT_02256___ 1457 CA-------ATTGGCAACA-------AAGAAACCGTCAAGCTTAACCAAG 1492
|| |.|||.||.| |||| ||.|.|.||||.||
BPUM_1234___y 1614 CACCGAATCAATGGAAAGATCAAGTGAAGA------CAGGTTGAACCGAG 1657
BSNT_02256___ 1493 AGAT---GGTACTCAGAGAAGCAATCGAAAACGATAGA-TTTGT-CTTGC 1537
||.| |.||| |.||.||.||..|||..|| |.| ||.|| ||| |
BPUM_1234___y 1658 AGCTTGAGTTAC---GGGATGCCATTCAAAGGGA-ACAGTTCGTGCTT-C 1702
BSNT_02256___ 1538 ATTATCAGCCGCAATTCAGTGTAAAAAAACAAAAAATGACAGGAGCAGAA 1587
||||.|||||.|||.|.||||..||||.|..|.|.|||||.||.|.||||
BPUM_1234___y 1703 ATTACCAGCCTCAAGTGAGTGCGAAAACAAGAGAGATGACTGGCGTAGAA 1752
BSNT_02256___ 1588 GCACTGATACGCCTTGTGA---CACCAGACGGGCAACTGCGT-----CCG 1629
||.||..||.| ..||| ||||.||.|| |.||| .|.
BPUM_1234___y 1753 GCTCTTCTAAG---AATGAAAGCACCCGATGG-----TTCGTTAAAATCA 1794
BSNT_02256___ 1630 CCCGGAGAATTTATCGGTGTCGCAGAAGAAACGGGACTTATTATTGATAT 1679
||.|..|..|||||.|...|.|||||.|||.|.||.||.||.||.|||||
BPUM_1234___y 1795 CCTGAGGCTTTTATTGAACTGGCAGAGGAATCAGGTCTGATCATCGATAT 1844
BSNT_02256___ 1680 CGGAAAGTGGATTATAGATGAAGCATGCAAGCAGGCAAGGATTTGGCACA 1729
.||.|..|||.|.||.|||...|||||||.||||||.|..|..|||.|..
BPUM_1234___y 1845 TGGCAGATGGGTCATTGATACCGCATGCAGGCAGGCTAAAACGTGGTATG 1894
BSNT_02256___ 1730 ATAAAGGCTATG-ATCTTTCTGTCGCCATTAATATTTCCGCCAGACAGTT 1778
||||.|| |.|| |..||.||||.||..|||||.|.||.||.|.|||.||
BPUM_1234___y 1895 ATAATGG-TCTGAAAATTCCTGTGGCTGTTAATTTATCTGCGAAACAATT 1943
BSNT_02256___ 1779 CCAATCCGAAGATC-----TGATTCCCCTCATCAAGGATACGCTTAATAA 1823
..|.||.||||| | ||||| |.||.|||...||.||.||.||
BPUM_1234___y 1944 TAATTCTGAAGA-CTTAATTGATT----TGATTAAGCTAACACTGAAAAA 1988
BSNT_02256___ 1824 ATACCAGCTTCCTCCG-CAGCTTCTTGAAGTGGAGGTGACGGAAAGCATG 1872
||||.|.||..|.||| || ||.||.||..|.||.||.||.|||||.|||
BPUM_1234___y 1989 ATACGATCTGACACCGTCA-CTGCTCGAGCTTGAAGTCACAGAAAGTATG 2037
BSNT_02256___ 1873 ACAATGGACAATCTCGATCACTCCAAAAAGGTTTTGTCATCCCTTAAAGA 1922
||||||||||||.||.|.||.||.|||.|.||..||.|.||.||.|||.|
BPUM_1234___y 2038 ACAATGGACAATATCAAGCAATCAAAACAAGTGCTGACGTCACTGAAACA 2087
BSNT_02256___ 1923 ATTAGGAATCAGAATCAGTATTGACGATTTCGGTACTGGTCACAGCTCCC 1972
..||||..|..|.||.||||||||.||.||||||||.|||||.||||||.
BPUM_1234___y 2088 TCTAGGCGTTCGCATTAGTATTGATGACTTCGGTACAGGTCATAGCTCCT 2137
BSNT_02256___ 1973 TTAGCTATTTGAAGGACTTCCCGATTCACAGGCTGAAGATTGACAAATCA 2022
|.||||||||.|||||.||.||.|||||..|.||.||.||.||||||||.
BPUM_1234___y 2138 TAAGCTATTTAAAGGATTTACCCATTCATCGTCTAAAAATCGACAAATCC 2187
BSNT_02256___ 2023 TTTATTGACGATATTCAGACCCATCCTAAATCAGAGCAAATTACCGGAGC 2072
||.|||||.||||||...|...||.|.|||||.||.||||||||.||.||
BPUM_1234___y 2188 TTCATTGAAGATATTTTAAATGATTCAAAATCTGAACAAATTACAGGTGC 2237
BSNT_02256___ 2073 TATTATTGCCATGGGGCATCAGCTGTCT-TTGCAGGTGATTGCCGAAGGT 2121
||||||.||.|||||.|||||.||.||| ||| |.||.||.||.||||||
BPUM_1234___y 2238 TATTATCGCGATGGGACATCAACTATCTCTTG-AAGTCATAGCAGAAGGT 2286
BSNT_02256___ 2122 GTGGAAA---ATGCAGCTCAAAAGCAGCTTCTATATGAAAAAGGCTGCGA 2168
||.|||| .|||| |||..|||||||.|||.||.|.||||.|||||
BPUM_1234___y 2287 GTTGAAACCTTTGCA---CAAGCGCAGCTTTTATCTGCACAAGGATGCGA 2333
BSNT_02256___ 2169 CCATTTGCAGGGCTTCTTTTTCAGCAGGCCAATACC--TCCGG--AACAA 2214
|.|..||||.|||||.|.|| |.||.||..|| |||.| |.|.|
BPUM_1234___y 2334 CGACCTGCAAGGCTTTTATT-----ATGCAAAGCCCCTTCCAGCAAGCGA 2378
BSNT_02256___ 2215 T-TCGAACAATTCAT----TATTGAACAGCCGTCGCA------------A 2247
| |||||.||||||| ||| ||..|||| |
BPUM_1234___y 2379 TATCGAAAAATTCATTGCCTAT-------CCAGCGCATCAGCTGGACACA 2421
BSNT_02256___ 2248 TAA 2250
|||
BPUM_1234___y 2422 TAA 2424
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