Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03872 and BPUM_1227

See DNA alignment / Visit BSNT_03872 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:24
# Commandline: needle
#    -asequence pep-align/BSNT_03872___yrdQ.1.24716.seq
#    -bsequence pep-align/BPUM_1227.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03872___yrdQ-BPUM_1227.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03872___yrdQ-BPUM_1227.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03872___yrdQ
# 2: BPUM_1227
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 293
# Identity:     116/293 (39.6%)
# Similarity:   182/293 (62.1%)
# Gaps:          11/293 ( 3.8%)
# Score: 572.0
# 
#
#=======================================

BSNT_03872___      1 MELRDLQIFKCVAHHKSITGAAKELNYVQSNVTARIKQLENELKTPLFNR     50
                     |::..|:|||.||..:|||.||::||||||||:|||::||.||..|||.|
BPUM_1227          1 MDITSLEIFKAVAIEQSITKAAEKLNYVQSNVSARIQRLEQELGVPLFYR     50

BSNT_03872___     51 HKKGVSLSPEGRKMIEYVNKILKDVEELEQVFLDTEIPSGILKIGTVETV    100
                     :.|.:||:|.||:::.|.||:|.|.||..:....:..|.|.|.||::|:.
BPUM_1227         51 YHKKISLTPAGRELLPYANKLLYDFEEAIEAVKLSSTPRGTLHIGSIEST    100

BSNT_03872___    101 RI--LPTIIASYYKKYPNVDLSLQAGLTEELIKKVMNHELDGAFISGPLK    148
                     ..  ||:|.|:|:|.:..|:||:....|.:.:..::|:::|||.:.||:.
BPUM_1227        101 ASTRLPSIFAAYHKTFSQVELSMYMAPTVDQVDAILNYKVDGALVDGPIL    150

BSNT_03872___    149 HSILEQYDVYTEKLTLVT--SNKTFNIEDFSTTPILVFNQGCGYRSRLEQ    196
                     |..:.:|.|..|.|.|:|  |.:.|::|.....|:|.....|.|..|.::
BPUM_1227        151 HPDIIEYPVLEESLVLITSYSQEEFHVESILHEPLLSSFAHCIYLGRWQR    200

BSNT_03872___    197 WLKDEGVLPNRMMEFNILETILNSVALGLGITVVPESAVMHLAAQGKVYC    246
                     ||:.:|..|.::||:..||.:|..|..|||:||:|:|.| ....||:..|
BPUM_1227        201 WLESKGFAPMKVMEYGTLEGVLKCVENGLGVTVLPKSMV-ESRMQGRFTC    249

BSNT_03872___    247 HPLPEKDSCISTIFIRHKDAYLTNSMRSLLKTI-VEHKNMSMS    288
                     |||||....:.|:|||.:|:|:|:::...::.| :.|.     
BPUM_1227        250 HPLPEPHRIVPTVFIRRRDSYMTSALSHFMEFIGITHM-----    287


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