Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03872 and BPUM_1227
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_03872___yrdQ.1.24716.seq
# -bsequence dna-align/BPUM_1227.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03872___yrdQ-BPUM_1227.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03872___yrdQ-BPUM_1227.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03872___yrdQ
# 2: BPUM_1227
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1034
# Identity: 527/1034 (51.0%)
# Similarity: 527/1034 (51.0%)
# Gaps: 337/1034 (32.6%)
# Score: 1060.5
#
#
#=======================================
BSNT_03872___ 1 ATGGA-ACTGCGAGAC----TTACAAATTTTCAAATGC-GTAGCCCAT-- 42
.|||| |.| || |||.|.||.||.||| || |||| |.||
BPUM_1227 1 TTGGATATT-----ACATCTTTAGAGATATTTAAA-GCAGTAG-CTATTG 43
BSNT_03872___ 43 CACAAGAGTATTAC---CGGTGCTGCAAAAGAGTTAAATTATGTACAATC 89
.|||| ||.||||| .|.|||||..||| |||||||||||.||.||
BPUM_1227 44 AACAA-AGCATTACAAAAGCTGCTGAGAAA---TTAAATTATGTGCAGTC 89
BSNT_03872___ 90 TAATGTAACTGCGCGGATTAAGC------------AATTAGAGAATGAGC 127
.|||||..||||.||.||..||| |||||| |.|.
BPUM_1227 90 CAATGTCTCTGCACGAATCCAGCGTCTTGAACAAGAATTAG-----GTGT 134
BSNT_03872___ 128 TCAAAACACCTCTTTTCAATCGCCATA----AAAAAGGGGTTTCACTAAG 173
| |||||||||.|||| ||| ||||| |.|.||..|||.
BPUM_1227 135 T-------CCTCTTTTCTATCG--ATATCACAAAAA--GATATCCTTAAC 173
BSNT_03872___ 174 CCCAGAGGGCCGAAAAATGATTG-AATACGTTAACAAAATTTTGAAAGAT 222
.||||..||.|||.||.|| ||| .|||.|..||||||.|..|..|.|||
BPUM_1227 174 GCCAGCAGGACGAGAACTG-TTGCCATATGCAAACAAATTACTCTACGAT 222
BSNT_03872___ 223 GTTGAAGAA---CTGGAGCAGGT----CTTT-CTAGATACT----GAAAT 260
.|||||||| .|.|||...|| |||| || .|||| ||
BPUM_1227 223 TTTGAAGAAGCGATAGAGGCCGTAAAGCTTTCCT--CTACTCCGCGA--- 267
BSNT_03872___ 261 ACCATCTGGAATATTAAAAATCGGTACAGTGGAAACAGTGAGGATACTGC 310
||||..||..|.||.||..|..|.|||.| ||||||
BPUM_1227 268 -------GGAACTTTGCATATTGGATCTATAGAATC--------TACTGC 302
BSNT_03872___ 311 --CGA---------CCATCATA---GCTTCCTATTATA----------AA 336
||| |||.|||| ||..|.|||.||| |.
BPUM_1227 303 TTCGACAAGATTGCCCAGCATATTCGCGGCATATCATAAGACATTTTCAC 352
BSNT_03872___ 337 AAGTA--------------------TCCTAATGTGGATTTATCA--TTGC 364
||||| .||||.|||.| |||| |||
BPUM_1227 353 AAGTAGAATTGAGCATGTATATGGCACCTACTGTAG----ATCAGGTTG- 397
BSNT_03872___ 365 AGGCTGGTCTAACAGAGGAACTTATTAAAAAGGTCATGAATCACGAATTA 414
|.|||..||| .|||| |.|||| ||
BPUM_1227 398 ATGCTATTCT-------CAACT-----ACAAGG---------------TA 420
BSNT_03872___ 415 GACGGAGC----TTTTATTTCAGGCCCTTTGAAACATTCT--ATTCTGGA 458
||.||.|| .||.|| ||.|| |||||| ||.|.|
BPUM_1227 421 GATGGTGCACTGGTTGAT----GGGCC-------CATTCTTCATCCCG-- 457
BSNT_03872___ 459 ACAGTATGATGTTTATACT------GAAAAA---CTTACTCTTGTAA--- 496
|||.||| ||..|||.|| |||.|| |||..|||..|.|
BPUM_1227 458 ACATTAT--TGAATATCCTGTATTGGAAGAATCCCTTGTTCTCATTACAA 505
BSNT_03872___ 497 -------CCAGTAACAAAACGTTTAATATAGAGGAT---TTTTCAACGA- 535
||||.|..|| ||..||.|||| || ||||..|.||
BPUM_1227 506 GCTACTCCCAGGAGGAA----TTCCATGTAGA--ATCAATTTTACATGAA 549
BSNT_03872___ 536 -------------------CTCCGATT-CTTGTTTTTAACCAGGGGTGCG 565
||| ||| |.|.|.||| ||||.|..
BPUM_1227 550 CCTTTGCTATCGTCATTTGCTC--ATTGCATCTATTT-----GGGGCGTT 592
BSNT_03872___ 566 GGTATCGGTCTAGGCTT---GAACAA-----TGGCTCAAAGATGAAGGTG 607
||.|.|| |.|.|| ||.||| |.|||| .|||||||||
BPUM_1227 593 GGCAGCG----ATGGTTAGAGAGCAAAGGATTTGCTC--CGATGAAGGT- 635
BSNT_03872___ 608 TGCTCCCAAACAGAATGATGGAATTTAACATCCTAGAG-----ACAATCT 652
||..|||| ||||.|.|| ||||| | ||
BPUM_1227 636 --------AATGGAAT-ATGGCACTT-------TAGAGGGCGTA----CT 665
BSNT_03872___ 653 TAAATAGTGTTGCACTTGGACTCGGTATAACAGTGGTACCGGAATCTGCT 702
||||| |.||||....|||.||.||..|.||.||..||||..|||||...
BPUM_1227 666 TAAAT-GCGTTGAGAATGGCCTAGGGGTTACCGTATTACCAAAATCTATG 714
BSNT_03872___ 703 GTTATGCATCT-AGCTGCACAAGGTAAGGTTTA-TTGTCACCCATTACCT 750
|| ||.|||| .|.|| ||||| |||.|||| .|||||.||||||||.
BPUM_1227 715 GT--TGAATCTCGGATG--CAAGG-AAGATTTACCTGTCATCCATTACCG 759
BSNT_03872___ 751 GAGAAAGATAGCTGTATCTCAACAATCTTTAT---ACGCCATAAAGATGC 797
||...|.||||...|.|..|.||..|.||||| |||.|.| |||.|
BPUM_1227 760 GAACCACATAGGATTGTGCCCACTGTGTTTATAAGACGGCGT---GATTC 806
BSNT_03872___ 798 GTACCTGACAAATTCAATGCGCAGCCTCCTTAAGACCATTGTT---GAA- 843
.|||.|||| ||.||| |||| |.| |||| || |||
BPUM_1227 807 TTACATGAC-----CAGTGC----CCTC--TCA---CATT-TTATGGAAT 841
BSNT_03872___ 844 -------CATAA---AAATATGAGTATGTCTTAA 867
||||| |.||.|||
BPUM_1227 842 TCATAGGCATAACTCATATGTGA----------- 864
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