Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02233 and BPUM_1221
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence pep-align/BSNT_02233.1.24716.seq
# -bsequence pep-align/BPUM_1221___ykoI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02233-BPUM_1221___ykoI.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02233-BPUM_1221___ykoI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02233
# 2: BPUM_1221___ykoI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 229
# Identity: 43/229 (18.8%)
# Similarity: 58/229 (25.3%)
# Gaps: 146/229 (63.8%)
# Score: 201.5
#
#
#=======================================
BSNT_02233 0 -------------------------------------------------- 0
BPUM_1221___y 1 MSRKTKMMLALAGCLVVLAAFATLMIQTIDQKILSEAEMKKIIAKDYNGN 50
BSNT_02233 0 -------------------------------------------------- 0
BPUM_1221___y 51 ITQIDLINHKQDYTLTLENANGIYQIIASSASGQMKEIRQIKSYQKPNEK 100
BSNT_02233 1 --------------------------------------------MQAKTV 6
.|...|
BPUM_1221___y 101 NAELQAEEAAVKKVSGTVIQKKEKSDRFIFTIQSKKELYQVDVDKQTFKV 150
BSNT_02233 7 LSADQIS--SKDQQKTPITKKEAKTIAERKTGGTADDADLEESEGTLIFE 54
|.|::.| ||:::.|.||.:||..||.::.|||.||||||...|.|:||
BPUM_1221___y 151 LEAEKKSPTSKEKKMTKITVEEAIRIAVKEVGGTVDDADLETFSGMLVFE 200
BSNT_02233 55 VDVDLPDDKEATVKINAYTGKVANIVYED 83
|::||||.:||.|.:|||||.:..|.||:
BPUM_1221___y 201 VELDLPDGREAEVLVNAYTGDIEGITYEN 229
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