Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02233 and BPUM_1221
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_02233.1.24716.seq
# -bsequence dna-align/BPUM_1221___ykoI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02233-BPUM_1221___ykoI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02233-BPUM_1221___ykoI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02233
# 2: BPUM_1221___ykoI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 716
# Identity: 172/716 (24.0%)
# Similarity: 172/716 (24.0%)
# Gaps: 490/716 (68.4%)
# Score: 405.5
#
#
#=======================================
BSNT_02233 0 -------------------------------------------------- 0
BPUM_1221___y 1 ATGTCTAGAAAAACGAAAATGATGCTTGCGCTCGCAGGATGTCTCGTCGT 50
BSNT_02233 0 -------------------------------------------------- 0
BPUM_1221___y 51 TCTTGCGGCCTTTGCAACACTCATGATTCAAACCATTGATCAAAAGATAT 100
BSNT_02233 0 -------------------------------------------------- 0
BPUM_1221___y 101 TGAGTGAAGCAGAAATGAAAAAAATAATTGCAAAAGACTACAATGGAAAC 150
BSNT_02233 0 -------------------------------------------------- 0
BPUM_1221___y 151 ATTACACAAATTGATTTAATCAATCATAAACAGGACTATACATTGACGCT 200
BSNT_02233 0 -------------------------------------------------- 0
BPUM_1221___y 201 GGAAAATGCAAATGGCATTTATCAAATCATTGCATCTTCCGCAAGCGGTC 250
BSNT_02233 0 -------------------------------------------------- 0
BPUM_1221___y 251 AAATGAAAGAAATTAGACAAATAAAAAGCTATCAAAAACCAAATGAAAAA 300
BSNT_02233 0 -------------------------------------------------- 0
BPUM_1221___y 301 AATGCTGAGCTTCAGGCAGAAGAAGCGGCTGTTAAAAAAGTGAGCGGTAC 350
BSNT_02233 1 -------------------------------------------ATGCAGG 7
||.||..
BPUM_1221___y 351 AGTCATTCAAAAGAAAGAAAAATCGGATCGTTTTATCTTTACGATCCAAT 400
BSNT_02233 8 CAAAAACAGTCTTGTCT---GCCGAT---------CAAATC--------- 36
||||||.||..||.|.| |.|||| |||| |
BPUM_1221___y 401 CAAAAAAAGAATTATATCAAGTCGATGTCGACAAGCAAA-CGTTTAAAGT 449
BSNT_02233 37 ------AGCAGCAAAGATCAA-----------CAAA-AAACGCCGATTAC 68
|||||.||||| || |||| |||.|...||.||
BPUM_1221___y 450 GCTTGAAGCAGAAAAGA--AAAGCCCGACCTCCAAAGAAAAGAAAATGAC 497
BSNT_02233 69 GAAAA---------AAGAAGCCAAAACT----ATTGCAG-AGCGAAAAAC 104
.|||| ||||||||| | ||||||| | |||.|.
BPUM_1221___y 498 AAAAATCACGGTCGAAGAAGCCA----TCCGAATTGCAGTA---AAAGAA 540
BSNT_02233 105 G--GGCGGTACAGCGGATGACGCAGATCTCGAAGAAAGTGAG-GGCACTC 151
| ||.||.||||.||||||.||.|||||.||| |.|.|.|| ||.|..|
BPUM_1221___y 541 GTCGGAGGGACAGTGGATGATGCCGATCTAGAA-ACATTTAGCGGTATGC 589
BSNT_02233 152 TCATCTTTGAAGTGGACGTTGATCTTCCTGATGATAAGGAAGCGACAGTG 201
||.|.|||||.|||||..|.|||.|.|||||.| .||||.|| |
BPUM_1221___y 590 TCGTATTTGAGGTGGAGCTCGATTTGCCTGACG-------GGCGAGAG-G 631
BSNT_02233 202 AAAA--------TCAATGCCTACACAGG-------AAAGGTAGCTAACAT 236
.|.| |.||.||.||.||||| .|||| .||
BPUM_1221___y 632 CAGAGGTACTTGTAAACGCATATACAGGGGATATTGAAGG-------AAT 674
BSNT_02233 237 TGTGTATGAAGACTGA 252
|..|||.|||.|||.|
BPUM_1221___y 675 TACGTACGAAAACTAA 690
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