Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02233 and BPUM_1221

See Amino acid alignment / Visit BSNT_02233 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_02233.1.24716.seq
#    -bsequence dna-align/BPUM_1221___ykoI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02233-BPUM_1221___ykoI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02233-BPUM_1221___ykoI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02233
# 2: BPUM_1221___ykoI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 716
# Identity:     172/716 (24.0%)
# Similarity:   172/716 (24.0%)
# Gaps:         490/716 (68.4%)
# Score: 405.5
# 
#
#=======================================

BSNT_02233         0 --------------------------------------------------      0
                                                                       
BPUM_1221___y      1 ATGTCTAGAAAAACGAAAATGATGCTTGCGCTCGCAGGATGTCTCGTCGT     50

BSNT_02233         0 --------------------------------------------------      0
                                                                       
BPUM_1221___y     51 TCTTGCGGCCTTTGCAACACTCATGATTCAAACCATTGATCAAAAGATAT    100

BSNT_02233         0 --------------------------------------------------      0
                                                                       
BPUM_1221___y    101 TGAGTGAAGCAGAAATGAAAAAAATAATTGCAAAAGACTACAATGGAAAC    150

BSNT_02233         0 --------------------------------------------------      0
                                                                       
BPUM_1221___y    151 ATTACACAAATTGATTTAATCAATCATAAACAGGACTATACATTGACGCT    200

BSNT_02233         0 --------------------------------------------------      0
                                                                       
BPUM_1221___y    201 GGAAAATGCAAATGGCATTTATCAAATCATTGCATCTTCCGCAAGCGGTC    250

BSNT_02233         0 --------------------------------------------------      0
                                                                       
BPUM_1221___y    251 AAATGAAAGAAATTAGACAAATAAAAAGCTATCAAAAACCAAATGAAAAA    300

BSNT_02233         0 --------------------------------------------------      0
                                                                       
BPUM_1221___y    301 AATGCTGAGCTTCAGGCAGAAGAAGCGGCTGTTAAAAAAGTGAGCGGTAC    350

BSNT_02233         1 -------------------------------------------ATGCAGG      7
                                                                ||.||..
BPUM_1221___y    351 AGTCATTCAAAAGAAAGAAAAATCGGATCGTTTTATCTTTACGATCCAAT    400

BSNT_02233         8 CAAAAACAGTCTTGTCT---GCCGAT---------CAAATC---------     36
                     ||||||.||..||.|.|   |.||||         |||| |         
BPUM_1221___y    401 CAAAAAAAGAATTATATCAAGTCGATGTCGACAAGCAAA-CGTTTAAAGT    449

BSNT_02233        37 ------AGCAGCAAAGATCAA-----------CAAA-AAACGCCGATTAC     68
                           |||||.|||||  ||           |||| |||.|...||.||
BPUM_1221___y    450 GCTTGAAGCAGAAAAGA--AAAGCCCGACCTCCAAAGAAAAGAAAATGAC    497

BSNT_02233        69 GAAAA---------AAGAAGCCAAAACT----ATTGCAG-AGCGAAAAAC    104
                     .||||         |||||||||    |    ||||||| |   |||.|.
BPUM_1221___y    498 AAAAATCACGGTCGAAGAAGCCA----TCCGAATTGCAGTA---AAAGAA    540

BSNT_02233       105 G--GGCGGTACAGCGGATGACGCAGATCTCGAAGAAAGTGAG-GGCACTC    151
                     |  ||.||.||||.||||||.||.|||||.||| |.|.|.|| ||.|..|
BPUM_1221___y    541 GTCGGAGGGACAGTGGATGATGCCGATCTAGAA-ACATTTAGCGGTATGC    589

BSNT_02233       152 TCATCTTTGAAGTGGACGTTGATCTTCCTGATGATAAGGAAGCGACAGTG    201
                     ||.|.|||||.|||||..|.|||.|.|||||.|       .||||.|| |
BPUM_1221___y    590 TCGTATTTGAGGTGGAGCTCGATTTGCCTGACG-------GGCGAGAG-G    631

BSNT_02233       202 AAAA--------TCAATGCCTACACAGG-------AAAGGTAGCTAACAT    236
                     .|.|        |.||.||.||.|||||       .||||       .||
BPUM_1221___y    632 CAGAGGTACTTGTAAACGCATATACAGGGGATATTGAAGG-------AAT    674

BSNT_02233       237 TGTGTATGAAGACTGA    252
                     |..|||.|||.|||.|
BPUM_1221___y    675 TACGTACGAAAACTAA    690


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