Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05200 and BPUM_1136

See DNA alignment / Visit BSNT_05200 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:52
# Commandline: needle
#    -asequence pep-align/BSNT_05200___racX.1.24716.seq
#    -bsequence pep-align/BPUM_1136___racX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05200___racX-BPUM_1136___racX.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05200___racX-BPUM_1136___racX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05200___racX
# 2: BPUM_1136___racX
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 247
# Identity:      68/247 (27.5%)
# Similarity:   116/247 (47.0%)
# Gaps:          35/247 (14.2%)
# Score: 222.5
# 
#
#=======================================

BSNT_05200___      1 ---MIGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTP     47
                        .|||:.||||.:|...:.|:|.:..    |..|.|:.|::..:.|. 
BPUM_1136___r      1 MSTTIGIMGGMGPLATIDLMKKIISHTP----AIKDQDHLHVIADNYPQ-     45

BSNT_05200___     48 FYADR----------PIDHDEMKKAIIDGAVKLEKTDVDFIALPCNTAHV     87
                      ..||          |.::      :|..|.:||:...|||.:.|||||.
BPUM_1136___r     46 -IPDRTNAIFGKGEDPTEY------MIASAKRLERAGADFILIACNTAHF     88

BSNT_05200___     88 YYEEIQQALSVPMLHIVEETIKEI-PHPAKKAVVLGTEPTIQSAIYQKVL    136
                     :.|.:||:..:|::::..||.|.: .|......:|.|:.|:::.:|||..
BPUM_1136___r     89 FLENVQQSTHIPIMNMPLETAKHLNKHHYTSVGLLCTDGTLKTKLYQKAC    138

BSNT_05200___    137 EENGQEVV-HKDHWQQAVNQLIAAIKQPNHMEYSQSLWQTLYEEISQHAD    185
                     ..:..:|: ..:..|:.|...|.|:|.....:....|.......|:|.|:
BPUM_1136___r    139 AHHKIDVMTPSEELQKNVMNGIYAVKAGKLSKGESELALASKILINQGAE    188

BSNT_05200___    186 IIISACTDLNAVLDHIQSEIPMIDSSACLAKSTVSTYLAYQS-----    227
                     .||:.||::..||...:: :.:||.:..|||..|.  |.|:.     
BPUM_1136___r    189 AIIAGCTEIPLVLRSTKA-VKVIDPTVILAKEAVK--LVYELEKLNI    232


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