Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05200 and BPUM_1136
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_05200___racX.1.24716.seq
# -bsequence dna-align/BPUM_1136___racX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05200___racX-BPUM_1136___racX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05200___racX-BPUM_1136___racX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05200___racX
# 2: BPUM_1136___racX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 856
# Identity: 397/856 (46.4%)
# Similarity: 397/856 (46.4%)
# Gaps: 329/856 (38.4%)
# Score: 701.0
#
#
#=======================================
BSNT_05200___ 1 ---------ATGATCGGAATATTAGCCGGAATGGGGCC----GAAATCGA 37
|.|||.|||||..|.|.|||||||||.|| |.|| |||
BPUM_1136___r 1 ATGTCTACAACGATTGGAATCATGGGCGGAATGGGCCCTTTAGCAA-CGA 49
BSNT_05200___ 38 CCTCACCGTTTAT-TGAT----AAGGTGATTGAT--TACTGTCAG----- 75
||.|| |||| ||..|.|||..| |||| .|||
BPUM_1136___r 50 --------TTGATCTGATGAAAAAAATCATTTCTCATACT-CCAGCGATA 90
BSNT_05200___ 76 -AAG-----------CTGTATGGGGCTTCAAACGATATTGACTACCCGCA 113
||| ||..|||.|..|.|| |||| |.||.|||||
BPUM_1136___r 91 AAAGATCAGGATCATCTTCATGTGATTGCA---GATA---ATTATCCGCA 134
BSNT_05200___ 114 ----CATGAT-GATCTATTCATGCCCGACGCCCTTCTAT----------- 147
|.|||| || .||.||||| .|||
BPUM_1136___r 135 AATCCCTGATAGA----------ACCAACGCC---ATATTTGGGAAAGGC 171
BSNT_05200___ 148 GCAGATCGTCCA---------ATTGACCATGACGAGATGAAAAAAGCGAT 188
|.|||||.|.|| |||| |||.| |..|||| |||
BPUM_1136___r 172 GAAGATCCTACAGAATATATGATTG--CATCA------GCTAAAA--GAT 211
BSNT_05200___ 189 TATCGACGGAGCGGTAAAGCTCGAGAAAACAGACGTGGATTTCATTGCGC 238
|| ||.|| || |||..|.|||.||.|||..|.
BPUM_1136___r 212 TA------GAACG--------CG------CAGGAGCGGACTTTATTCTGA 241
BSNT_05200___ 239 TGCCTTGTAATACGGCGCATGTCTACTATGAAGAGATTCAGC-AGGCAC- 286
|..|.||.|||||.||.||..|||..|..|||.|..|.||.| |..|||
BPUM_1136___r 242 TTGCATGCAATACCGCTCACTTCTTTTTAGAAAACGTACAACAATCCACT 291
BSNT_05200___ 287 --TGTCGGTTCCTATGTTGCATATTGTTGAG------GAAACGATAAAAG 328
|.|| |||||..||.|||| | |||||...|||
BPUM_1136___r 292 CATATC----CCTATTATGAATAT------GCCATTAGAAACCGCAAA-- 329
BSNT_05200___ 329 AGATTCCGCATCCTGCAAAAAAA----------GCGGTGG---TTTTAGG 365
||| ||||.|.|||.| .|.|||| |.|||.|
BPUM_1136___r 330 -------GCA-CCTGAACAAACATCACTATACGTCTGTGGGCTTATTATG 371
BSNT_05200___ 366 AACAGA-GCCAACCAT------CCAATCCGCCATCTACCAAAAAGTTCTG 408
.||.|| |.|| ||| ||||.| ||||||||||.| ||.
BPUM_1136___r 372 TACTGATGGCA--CATTAAAAACCAAGC-----TCTACCAAAAGG--CTT 412
BSNT_05200___ 409 GAGGAAAATGGACAAGAAGTTGTTCACAAGGACCATTGGCAGCAGGCTGT 458
| ||..|| ||||||| ||||.|..|| |
BPUM_1136___r 413 G-------TGCTCA---------TCACAAG----ATTGACGTCA-----T 437
BSNT_05200___ 459 GAACC---------AGCTTATCGCCGCAATCAAACAGCCAAA--TCAT-- 495
||.|| ||||| |||..||| ||||
BPUM_1136___r 438 GACCCCAAGTGAAGAGCTT---------------CAGAAAAATGTCATGA 472
BSNT_05200___ 496 ATGGAGTAT------TCACAATC------ATTG----------------- 516
||||..||| |.| ||.| ||||
BPUM_1136___r 473 ATGGGATATATGCAGTGA-AAGCTGGGAAATTGAGTAAAGGCGAAAGTGA 521
BSNT_05200___ 517 --TGGCAGACGCTATATGAAGA-----AATCAGTCAGCATGCAGACATCA 559
|||||...|| .|.||.| |||||.|||...|||.||...||
BPUM_1136___r 522 ACTGGCATTAGC---CTCAAAAATTTTAATCAATCAAGGTGCCGAAGCCA 568
BSNT_05200___ 560 TCATTTCAGCCTGCACGGA------TTTAAATGCGGTGTTAGATCATATT 603
|||||.|.|.|||.||.|| |||| |.|.|.||.|| |..
BPUM_1136___r 569 TCATTGCCGGCTGTACAGAAATTCCTTTA-----GTTCTAAGGTC--AAC 611
BSNT_05200___ 604 CAAA---GTGAGATTCCGATGATAGATTCCTCTGCCTGTC---TTGCAAA 647
|||| ||||.| .||||.|| |.|| .||||| |||...|
BPUM_1136___r 612 CAAAGCTGTGAAA-----GTGATTGA---CCCT-ACTGTCATTTTGGCGA 652
BSNT_05200___ 648 AAGCA-CTGTCAGCACA-------TAT---CTTGCTTATCAAAGCTAG-- 684
|||.| |||| |.| ||| |||| .|||||||.
BPUM_1136___r 653 AAGAAGCTGT----AAAATTAGTGTATGAGCTTG-----AAAAGCTAAAC 693
BSNT_05200___ 684 ------ 684
BPUM_1136___r 694 ATTTAA 699
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