Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05549 and BPUM_0769
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence pep-align/BSNT_05549___ywpE.1.24716.seq
# -bsequence pep-align/BPUM_0769.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05549___ywpE-BPUM_0769.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05549___ywpE-BPUM_0769.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05549___ywpE
# 2: BPUM_0769
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 202
# Identity: 33/202 (16.3%)
# Similarity: 54/202 (26.7%)
# Gaps: 102/202 (50.5%)
# Score: 136.5
#
#
#=======================================
BSNT_05549___ 0 -------------------------------------------------- 0
BPUM_0769 1 MKKRTLLGSFLVVAGLMLISVPFIYEWRTSQETAAMEQALKMIEENDSDA 50
BSNT_05549___ 1 ----------------------------------------------MRPD 4
::..
BPUM_0769 51 LSSIPHLTVSEEDLRDVMELEIPSIDLNEKVLPVTSKENLGIALTQIKSH 100
BSNT_05549___ 5 QKMGEGNYPLAGHHLKQKNLLFGPLENIKTGAQIVITDFKKDYIYSVTSK 54
|..||||:.:|||...:.:.||..|..:..|.::|:....:.|.|.:.|.
BPUM_0769 101 QMPGEGNFTIAGHRGYRGDRLFRQLPEVPKGEKVVLHHQAETYEYKIVSS 150
BSNT_05549___ 55 DIISEMDADVIEETNKKEITLITCDKAVKTEGRLVVKGELVD-SFGHTN- 102
..|...|.||:::..|.|:||||| .:..:.|.|:||..:: |.|...
BPUM_0769 151 ATIEPTDVDVLKDRGKNELTLITC--TLDGQKRFVLKGIRINASKGEQPS 198
BSNT_05549___ 102 -- 102
BPUM_0769 199 DV 200
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