Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05549 and BPUM_0769
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_05549___ywpE.1.24716.seq
# -bsequence dna-align/BPUM_0769.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05549___ywpE-BPUM_0769.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05549___ywpE-BPUM_0769.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05549___ywpE
# 2: BPUM_0769
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 676
# Identity: 180/676 (26.6%)
# Similarity: 180/676 (26.6%)
# Gaps: 440/676 (65.1%)
# Score: 353.0
#
#
#=======================================
BSNT_05549___ 0 -------------------------------------------------- 0
BPUM_0769 1 ATGAAAAAAAGAACCTTATTAGGCAGCTTTTTGGTGGTCGCGGGACTAAT 50
BSNT_05549___ 0 -------------------------------------------------- 0
BPUM_0769 51 GCTCATTTCCGTTCCTTTTATATATGAGTGGCGAACTTCTCAAGAGACGG 100
BSNT_05549___ 0 -------------------------------------------------- 0
BPUM_0769 101 CAGCAATGGAACAGGCATTAAAAATGATTGAAGAAAATGACAGTGATGCC 150
BSNT_05549___ 0 -------------------------------------------------- 0
BPUM_0769 151 CTTTCTTCTATTCCACATCTCACTGTGTCAGAAGAAGACCTTCGAGATGT 200
BSNT_05549___ 0 -------------------------------------------------- 0
BPUM_0769 201 GATGGAGCTAGAGATTCCGTCGATTGATTTAAACGAAAAAGTGCTTCCTG 250
BSNT_05549___ 1 -----------------------ATGCGCCCGGA-TCAAA---------- 16
|| .||.|.|| |||||
BPUM_0769 251 TTACATCAAAAGAAAATTTAGGTAT-TGCACTGACTCAAATTAAATCTCA 299
BSNT_05549___ 17 --AAAT---GGGTGAGGGAAATTATC-CGTTGGCGGGCCATCATTTGAAG 60
|||| ||||||.||||||| || ||.|.||.||||| |.||.|
BPUM_0769 300 TCAAATGCCGGGTGAAGGAAATT-TCACGATTGCAGGCCA----TAGAGG 344
BSNT_05549___ 61 CAAAAGA----ATCTTCTGTTCGGACCTCTG-----------GAAAACAT 95
..|.||| |||.|||.|||.|.|..||| ||||..|.
BPUM_0769 345 GTATAGAGGCGATCGTCTTTTCAGGCAGCTGCCAGAGGTACCGAAAGGAG 394
BSNT_05549___ 96 AAAAACAGGT-GCC---CAAATTGTCATCACGGATTTTAAAA---AGGAT 138
||||| || |.| || ||||||.|.| .||| |.||.
BPUM_0769 395 AAAAA---GTCGTCTTACA-----TCATCAAGCA----GAAACATACGAA 432
BSNT_05549___ 139 TATA------TCTATTCTGTAACATCTAAA--GACATCATATCGGAAATG 180
|||| ||...||.|..|||..|.|| ||||
BPUM_0769 433 TATAAAATTGTCAGCTCAGCTACAATTGAACCGACA-------------- 468
BSNT_05549___ 181 GATGCAGATGTAATTGAGGA------GACAAACAAA---AAAGAGATTAC 221
||||..||||||.|..|||| ||.||||.|| |.|..||||||
BPUM_0769 469 GATGTTGATGTACTCAAGGATCGCGGGAAAAACGAACTGACATTGATTAC 518
BSNT_05549___ 222 --GCTAATC-ACATGTGACAAGGCTGTCA-AAACTGAAGGGCGCCTTGTT 267
| ||.|| ..||| |||| ||| |||.||||.
BPUM_0769 519 TTG-TACTCTTGATG----------GTCAGAAA--------CGCTTTGTC 549
BSNT_05549___ 268 GTGAAAGGGGAATTGGTTGATTCTTTTGGCCATACAAATTAA-------- 309
.|.||||| .||||.|||.||
BPUM_0769 550 TTAAAAGG----------------------AATACGAATCAATGCTTCAA 577
BSNT_05549___ 309 -------------------------- 309
BPUM_0769 578 AGGGTGAGCAACCGTCGGATGTATAA 603
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