Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00892 and BPUM_0584

See DNA alignment / Visit BSNT_00892 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:37
# Commandline: needle
#    -asequence pep-align/BSNT_00892___ydeE.1.24716.seq
#    -bsequence pep-align/BPUM_0584___ydeE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00892___ydeE-BPUM_0584___ydeE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00892___ydeE-BPUM_0584___ydeE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00892___ydeE
# 2: BPUM_0584___ydeE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 316
# Identity:      87/316 (27.5%)
# Similarity:   147/316 (46.5%)
# Gaps:          48/316 (15.2%)
# Score: 318.0
# 
#
#=======================================

BSNT_00892___      1 MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISL     50
                     ||..:.:..::::|||||.|:|..:|.:..:..|.:||:|:|..:.|.|:
BPUM_0584___y      1 MDYYERIQHSIEFIEENLQNNISIKEISSKSCFSAFHFQRLFQAITGFSV     50

BSNT_00892___     51 SEYIRRRRLTLAAFELKDSNVKVIDIAIKYGYNSPDSFARAFQNLHGINP    100
                     .||||.|||:.||..||::...|:.|||.:.|.|.::|.|||....|:.|
BPUM_0584___y     51 QEYIRNRRLSEAARLLKETKQNVLHIAIAFQYGSQEAFTRAFVQFFGVTP    100

BSNT_00892___    101 SKARLNGHSLKAYPRMTF-QLTIKGGNEMNYR---IEEKEAFRIVGIKKR    146
                     .:.|..|..||...:|.| ....|..:|:|..   |.:...|.|:|.:.:
BPUM_0584___y    101 GRFRKEGVMLKKQNKMDFLAYQSKLDSELNMNKPVITQLGNFYIIGYEYQ    150

BSNT_00892___    147 -----------VPIIFKGINPEIASMWESLDEKAINKLKELSNVAPSGLI    185
                                :|:.:.....:  ..::.:.:|          :||....
BPUM_0584___y    151 TNLQNEEYFTDIPLFYMDFGKK--EYYQQIQKK----------IAPHMAY    188

BSNT_00892___    186 SASTNFSEGRTEEKGELDHYIGAATTK---QCPDNFSRLEVPALTWAVFE    232
                     ..||:|     ::.|.....:|.....   :..:.|.::.:|...:|.|:
BPUM_0584___y    189 GISTSF-----QDDGHFSFVVGEEVEDFDLELNEGFVKIVIPEGKYAEFK    233

BSNT_00892___    233 SIGPFPDTLQEVWGRIYSEWFPSSNYEQIEGPEILWNEHKDV---TSPS-    278
                     ..|.. :.:|.....||..|.|:||||:..||:.   |..||   ..|: 
BPUM_0584___y    234 VSGSH-EMVQNTRRYIYGSWLPNSNYERTSGPDF---EITDVLHSNGPND    279

BSNT_00892___    279 FKSEIWIPITKKEYVF    294
                     .|.:|:|||.:     
BPUM_0584___y    280 IKMKIYIPIKE-----    290


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