Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00892 and BPUM_0584
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:37
# Commandline: needle
# -asequence dna-align/BSNT_00892___ydeE.1.24716.seq
# -bsequence dna-align/BPUM_0584___ydeE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00892___ydeE-BPUM_0584___ydeE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00892___ydeE-BPUM_0584___ydeE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00892___ydeE
# 2: BPUM_0584___ydeE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1050
# Identity: 539/1050 (51.3%)
# Similarity: 539/1050 (51.3%)
# Gaps: 342/1050 (32.6%)
# Score: 1035.5
#
#
#=======================================
BSNT_00892___ 1 ATGGATTTGCTTAAAAGTAT----GAATAGGGCGTTAA----AGTATATT 42
||||||| |.||| |||||..||.||.| |||.||||
BPUM_0584___y 1 ATGGATT--------ACTATGAGAGAATACAGCATTCAATTGAGTTTATT 42
BSNT_00892___ 43 GAAGAAAACCTCACTAACGATAT-----------TGATTTTCAAGAGGCA 81
||.||.||||||...|||.|||| .|||||.|..|
BPUM_0584___y 43 GAGGAGAACCTCCAAAACAATATAAGTATAAAGGAGATTTCCTCG----- 87
BSNT_00892___ 82 GCAAAGCTTGCTTTCTGCTCTGAATATCATTTTAAAAG-GATGTTTTCCT 130
|||.|.|||||| ||.|..|.||||||| .|| |||..||||..
BPUM_0584___y 88 --AAATCCTGCTTT----TCAGCGTTTCATTTT--CAGCGATTGTTTCAA 129
BSNT_00892___ 131 TCC-TTGCAGGTATTTCATTATCGGAATATATTCGTCGCAGACGTCTTAC 179
.|| ||.|||||.||||..|....||.||||||.|....|||.|.|| |
BPUM_0584___y 130 GCCATTACAGGTTTTTCTGTGCAAGAGTATATTAGAAATAGAAGGCT--C 177
BSNT_00892___ 180 TCT-----TGC-AGCTTTTGAACTGAAAGACAGC--AATGT------AAA 215
||| ||| .|.||.|.||..||||.|.||| ||||| .|.
BPUM_0584___y 178 TCTGAGGCTGCTCGATTATTAAAAGAAACAAAGCAGAATGTCTTACACAT 227
BSNT_00892___ 216 AGTGATTGATATTGCAATA--------AAGTA-CGGTTATAACTCACCTG 256
||.|||||.| ||.||.|| |||.| ||.||| |.|.||
BPUM_0584___y 228 AGCGATTGCT-TTCCAGTATGGATCTCAAGAAGCGTTTA-----CTCGTG 271
BSNT_00892___ 257 ----------ATTCTTTTG-----CA-CGGGCA---TTCCAAAA------ 281
|||||||.| || |.|||| |||.||||
BPUM_0584___y 272 CTTTTGTACAATTCTTTGGAGTGACACCAGGCAGGTTTCGAAAAGAGGGA 321
BSNT_00892___ 282 ------TTTACATGGCATAAACCCATCAAAAGCCAGACTTAATGGCCATT 325
||.| |.||||..|.||| ||||| |||
BPUM_0584___y 322 GTGATGTTAA------AGAAACAAAACAA-----------AATGG--ATT 352
BSNT_00892___ 326 CCCTTAAAGCTTATCCACGAATGACCTTCCAGCTA-ACAATTAAAGGAGG 374
||..|||.|| ||| |.|| .||||| |||.| |
BPUM_0584___y 353 ---TTTTAGCGTA-CCA------ATCT--AAGCTAGACAGT--------G 382
BSNT_00892___ 375 AAATGAA-ATGAACTACCGTATTGAAGAA---AAAGAGGCA--TTTCGCA 418
||.|.|| |||||..|.|.|.|| |..| ||..||||| |||...|
BPUM_0584___y 383 AACTCAATATGAATAAACCTGTT--ATCACTCAATTAGGCAATTTTTATA 430
BSNT_00892___ 419 TCGTTGGCATTAAAAAAAGAGT-TC---CTATTATTTTTAAAGGGATTAA 464
||.|||| || |.|||| || ||| ||.||.|||..||..||
BPUM_0584___y 431 TCATTGG--TT-----ACGAGTATCAAACTA--ATCTTCAAAATGAGGAA 471
BSNT_00892___ 465 T-----CCGGAGATTGC----ATCTATGTGGGAAAGTTTAGATGAAAAAG 505
| .|.||.|||.| .|.|||.||| |.|||.|| ||||||
BPUM_0584___y 472 TATTTCACTGACATTCCTTTGTTTTATATGG---ATTTTGGA--AAAAAG 516
BSNT_00892___ 506 CAATA-AATAAACTAAAAGAGCTTTCTAATG----TAGCACCATCA---G 547
.|.|| .||.||| ||| |||.||.| ||||||| ||| |
BPUM_0584___y 517 GAGTATTATCAAC----AGA---TTCAAAAGAAAATAGCACC-TCATATG 558
BSNT_00892___ 548 GACTCATTAGTGCATCCAC-------CA-----------ATTTTTC---T 576
| ||.| |.||..|||.|| || ||||||| |
BPUM_0584___y 559 G-CTTA-TGGTATATCTACTTCTTTTCAAGATGATGGTCATTTTTCGTTT 606
BSNT_00892___ 577 GAAGGTCGGACTGAGGAAAAAGGAGAG---CTCGATC----ACTATATTG 619
| .|||.|| ||||.|||..||| .|||||| |.||.||
BPUM_0584___y 607 G-TGGTAGG-----GGAAGAAGTGGAGGATTTCGATCTAGAATTAAAT-- 648
BSNT_00892___ 620 GCGCAGCCACAACG--------AAACAGTGTCCAGATAATTTCTCACGGC 661
.||.| |||.|||| |||.||.|.||
BPUM_0584___y 649 ---------GAAGGGTTTGTAAAAATAGTG--------ATTCCTGAGGG- 680
BSNT_00892___ 662 TTGAAGTTCCTGC----CTTAACGTGGGCTGTAT-TCGAATCAATCGGAC 706
|||.| .||| .||||.|||.| ||.|| || ||.||..||..
BPUM_0584___y 681 --GAAAT--ATGCAGAATTTAAAGTGAG-TGGATCTC--ATGAAATGGTG 723
BSNT_00892___ 707 CATTTCCGGATACACTGCAAGAAG-TATGGGGACGCATTTATTCCGAA-- 753
|| |.||||| ||||| ||| ||.|| |.|.|
BPUM_0584___y 724 CA-------AAACACT---AGAAGATAT--------ATCTA--CGGTAGC 753
BSNT_00892___ 754 TGGTTTCCATCGTCAAATTACGAACAAATAGAA-----GGTCCAGAAATA 798
|||.|||||...||||||||.||| |||| ||.|||| |
BPUM_0584___y 754 TGGCTTCCAAATTCAAATTATGAA-----AGAACAAGTGGACCAG----A 794
BSNT_00892___ 799 TTGTGGAATGAGCATAAGGATG--TAACAT--------CACCATC--TTT 836
||.||.||| |.|| |||| |.|||| |.|.|.| |.|
BPUM_0584___y 795 TTTTGAAAT-AACA----GATGTCTTACATTCGAATGGCCCGAACGATAT 839
BSNT_00892___ 837 TAAAAGTGAAATTTGGATACCA-ATTACAAAAAAGGAATACGTTTTTTGA 885
.|||| |||||.| |.| |||.|.|..||||||||.
BPUM_0584___y 840 CAAAA-TGAAAAT------CTATATTCCTATCAAGGAATAA--------- 873
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