Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00840 and BPUM_0555
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:35
# Commandline: needle
# -asequence pep-align/BSNT_00840___ydcR.1.24716.seq
# -bsequence pep-align/BPUM_0555___ydcR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00840___ydcR-BPUM_0555___ydcR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00840___ydcR-BPUM_0555___ydcR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00840___ydcR
# 2: BPUM_0555___ydcR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 369
# Identity: 217/369 (58.8%)
# Similarity: 278/369 (75.3%)
# Gaps: 20/369 ( 5.4%)
# Score: 1171.0
#
#
#=======================================
BSNT_00840___ 1 MDELKHPPHANRGVVIVKEENETVESPLVSMVDYIRVSFKTHDVDRIIEE 50
|.....||||||||:..|||. :|.|.|||||:|:||||||:|.||:.
BPUM_0555___y 1 MTGKVKPPHANRGVLRKKEEE---KSQLTSMVDYVRISFKTHDIDHIIQN 47
BSNT_00840___ 51 VLHLSKDFMTEKQSGFYGYVGTYELDYVKVFYSAPDDNRGVLIEMSGQGC 100
|||::::||||:..|||||:||:.:|.:|||||||||.||.|||:||:||
BPUM_0555___y 48 VLHINREFMTEEPRGFYGYIGTWRMDMIKVFYSAPDDERGTLIELSGKGC 97
BSNT_00840___ 101 RQFESFLECRKKTWYDFFQDCMQQGGSFTRFDLAIDDKKTYFSIPELLKK 150
||||||||||.|||:||||||:.:.|:|||.|:||||||||||||.|||:
BPUM_0555___y 98 RQFESFLECRGKTWFDFFQDCLNEKGNFTRLDIAIDDKKTYFSIPNLLKR 147
BSNT_00840___ 151 AQKGECISRFRKSDFNGSLGLSDGITGGTTIYFGSKKSEAYLCFYEKNYE 200
.|||.|:||:|:.|.|||..:.||.:.||||||||||||:||||||||||
BPUM_0555___y 148 VQKGLCVSRYRRVDNNGSNQIEDGSSAGTTIYFGSKKSESYLCFYEKNYE 197
BSNT_00840___ 201 QAEKYNIPLEELGDWNRYELRLKNERAQVAIDALLKTKDLTLIAMQIINN 250
||:|:|:..::|..|||||:|||:|||..|:.||:..::|..||:.||:|
BPUM_0555___y 198 QADKFNLSYDDLEKWNRYEIRLKSERAHSAVCALIADRNLKKIAIGIISN 247
BSNT_00840___ 251 YVRFVDADENITREHWKTSLFWSEFIGDVGKLPLYVKPQKDFYQKSRNWL 300
.:|||:......:...|||.||.:|||||.||.|.::|:||||:||||||
BPUM_0555___y 248 CIRFVEEKGEGDKRKRKTSPFWLKFIGDVEKLQLTIEPKKDFYEKSRNWL 297
BSNT_00840___ 301 RNSCAPTMKMVLEADQ-----------------HLGKTDLSDMIAEAELA 333
:||||||||::||.|: .||.:||.:||..|:|.
BPUM_0555___y 298 QNSCAPTMKVILEVDRVLGNSRLLDVILNAEEGALGDSDLLNMIFNAKLQ 347
BSNT_00840___ 334 EKHEKMLNVFIADVADMVV 352
:||||||..|:..:.:|||
BPUM_0555___y 348 DKHEKMLETFLTPIHEMVV 366
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