Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00840 and BPUM_0555
See
Amino acid alignment /
Visit
BSNT_00840 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:35
# Commandline: needle
# -asequence dna-align/BSNT_00840___ydcR.1.24716.seq
# -bsequence dna-align/BPUM_0555___ydcR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00840___ydcR-BPUM_0555___ydcR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00840___ydcR-BPUM_0555___ydcR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00840___ydcR
# 2: BPUM_0555___ydcR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1172
# Identity: 748/1172 (63.8%)
# Similarity: 748/1172 (63.8%)
# Gaps: 184/1172 (15.7%)
# Score: 2167.5
#
#
#=======================================
BSNT_00840___ 1 ATGGATG--------AGCTAAAACACCCCCCCCACGCTAACAGGGGGGTA 42
||| ||..||| |||||||||||||||||||||||.
BPUM_0555___y 1 ----ATGACGGGGAAAGTGAAA----CCCCCCCACGCTAACAGGGGGGTT 42
BSNT_00840___ 43 GTAATCGTAAAAGAAG-AGAATGAAACCGTTGAAAGTCCTTTAGTATCAA 91
.|| ||.|||| ||| |||| |||| ||||.|..|||..|||||
BPUM_0555___y 43 CTA--CGGAAAA-AAGAAGAA-GAAA------AAAGCCAATTAACATCAA 82
BSNT_00840___ 92 TGGTTGACTATATTCGAGTCTCTTTTAAAACTCATGATGTTGACAGAATT 141
|||||||||||.|||||.|...|||.|||||.||||||.|||||...||.
BPUM_0555___y 83 TGGTTGACTATGTTCGAATTAGTTTCAAAACACATGATATTGACCATATC 132
BSNT_00840___ 142 ATTGAAGAGGTTCTTCATCTTAGCAAAGACTTTATGACTGA------GAA 185
||..||.|.||.||.|||.|||.||.|||.||.|||||.|| ||.
BPUM_0555___y 133 ATCCAAAACGTCCTACATATTAACAGAGAATTCATGACAGAAGAGCCGAG 182
BSNT_00840___ 186 ACAATCTGGTTTCTATGGCTACGTTGGCAC--GTATGAACTGGACTATG- 232
| ||.||.|||||.||..|.||.|| |.| ||| |||| ||||
BPUM_0555___y 183 A------GGCTTTTATGGATATATAGGAACTTGGA-GAA-TGGA-TATGA 223
BSNT_00840___ 233 TCAAAGTCTTTTATTCTGCGCCGGATGA-CAACAGAGGTGTTTTGATAGA 281
||||.||.||||||..|||.||.||||| .||| ||||...||||||.||
BPUM_0555___y 224 TCAAGGTTTTTTATAGTGCACCAGATGATGAAC-GAGGGACTTTGATCGA 272
BSNT_00840___ 282 AATGTCCGGTCAAGGTTGCCGTCAATTTGAATCCTTCTTGGAATGCCGGA 331
|.|.||.|||.||||.||.||.||.||||||||.||.||.|||||..|
BPUM_0555___y 273 ATTATCTGGTAAAGGATGTCGACAGTTTGAATCATTTTTAGAATGTAG-- 320
BSNT_00840___ 332 AG--AAAACATGGTACGACTTCTTTCAAGA----TTGCATGCAACAAGGC 375
|| ||.|||||||..||.||.|||||||| |||.||| ||.||||.
BPUM_0555___y 321 AGGTAAGACATGGTTTGATTTTTTTCAAGACTGTTTGAATG-AAAAAGGA 369
BSNT_00840___ 376 GGTTCGTTCACTCGCTTTGATTTAGCTATTGATGATAAAAAGACATACTT 425
..| ||.||..|..|.|||.|.||.||||||||.||.||.|||||.||
BPUM_0555___y 370 AAT---TTTACAAGACTAGATATTGCAATTGATGACAAGAAAACATATTT 416
BSNT_00840___ 426 TTCTATACCGGAACTGTTAAAGAAAGCCCAAAAGGGCGAATGCATTTCAC 475
|||||||||..|.||.||.||.|.||..||||||||...|||..|||||.
BPUM_0555___y 417 TTCTATACCTAACCTTTTGAAAAGAGTTCAAAAGGGGTTATGTGTTTCAA 466
BSNT_00840___ 476 GGTTTAGAAAATCGGATTTCAATGGCTCCTTAGGTCTATC-------TGA 518
|||.|.|||.|...|||..||||||||| || ||| .||
BPUM_0555___y 467 GGTATCGAAGAGTTGATAACAATGGCTC--TA-----ATCAGATAGAGGA 509
BSNT_00840___ 519 TGGCATTACAGGCGGGACGACAATATATTTCGGTTCTAAAAAGTCAGAAG 568
|||.|.|.|||..||.||||||||||||||.||.||||||||.||||||.
BPUM_0555___y 510 TGGAAGTTCAGCAGGAACGACAATATATTTTGGATCTAAAAAATCAGAAT 559
BSNT_00840___ 569 CGTACCTTTGCTTTTATGAGAAAAACTATGAACAAGCAGAAAAGTATAAC 618
|.||.|||||.||.|||||.|||||.||||||||.||.||.||||.|||.
BPUM_0555___y 560 CCTATCTTTGTTTCTATGAAAAAAATTATGAACAGGCTGATAAGTTTAAT 609
BSNT_00840___ 619 AT-TCCGTTA-GAAGAACTAGGCGATTGGAATCGTTATGAATTGCGGCTT 666
.| || ||| ||.||..|||...|.||||||.|.||||||.|.||.|||
BPUM_0555___y 610 TTATC--TTACGATGATTTAGAGAAATGGAATAGATATGAAATCCGACTT 657
BSNT_00840___ 667 AAAAATGAACGTGCACAAGTGGCTATAGATGCTTTATTGAAAACAAAGGA 716
|||..||||||.|||||...|||..||..||| |||.|.|.|| ||
BPUM_0555___y 658 AAATCTGAACGAGCACATTCGGCAGTATGTGC---ATTAATAGCA---GA 701
BSNT_00840___ 717 T-TTAACCTT-----AATCGCTATGCAG--ATCATTAATAACTATGTAAG 758
| .|||.||| |||.||.|| || ||.||||.|||| ||||
BPUM_0555___y 702 TCGTAATCTTAAAAAAATTGCAAT--AGGCATTATTAGTAAC--TGTA-- 745
BSNT_00840___ 759 GTTCG--TTGATGCTGATGAAAACATCACTAGAGA----GCATTGGAAAA 802
|||| |||..|..|| ||||..|..|..|||.| |.|..||||||
BPUM_0555___y 746 -TTCGCTTTGTAGAAGA-GAAAGGAGAAGGAGACAAAAGGAAAAGGAAAA 793
BSNT_00840___ 803 CGAGCCTTTTTTGGTCTGAATTTATAGGTGATGTTGGAAAACTT------ 846
|.||.|.|||||||..|.|||||||.|||||.||| ||.||.||
BPUM_0555___y 794 CTAGTCCTTTTTGGCTTAAATTTATTGGTGACGTT-GAGAAGTTGCAATT 842
BSNT_00840___ 847 --CCTTTGTACGTCAAACCACAAAAAGACTTCTATCAAAAATCAAGAAAC 894
||.||| ||||..|||||||.||.|||.||||||||.|.||.
BPUM_0555___y 843 AACCATTG-------AACCTAAAAAAGATTTTTATGAAAAATCACGGAAT 885
BSNT_00840___ 895 TGGCTTCGTAACTCTTGTGCTCCCACTATGAA------------------ 926
|||||.|..||...|||.||.||.||||||||
BPUM_0555___y 886 TGGCTGCAAAATAGTTGCGCACCTACTATGAAGGTTATTCTTGAAGTGGA 935
BSNT_00840___ 927 -------------AATGGT-GC----TGGAAGCTGAT--------CAGCA 950
|||.|| || ||||.| |||| |||.|
BPUM_0555___y 936 TAGAGTTTTGGGTAATAGTCGCCTATTGGATG-TGATTTTAAATGCAGAA 984
BSNT_00840___ 951 --------CTTAGG-GAAAACTGATCTGTCAGATATGA-TCGCAGAAGCT 990
.||||| ||.|.| |||||.|.|.|||||| |..|| |.||
BPUM_0555___y 985 GAAGGAGCTTTAGGAGATAGC-GATCTATTAAATATGATTTTCA-ATGC- 1031
BSNT_00840___ 991 GAACTGGC-GGAAAAACATGAAAAAATGTT--GAATGTGTTTATAGCTGA 1037
|||.|..| .||.||.|||||||||||||| .||..|..|||..||..|
BPUM_0555___y 1032 GAAATTACAAGATAAGCATGAAAAAATGTTAGAAACATTCTTAACGCCAA 1081
BSNT_00840___ 1038 TGTTGCTGACATGGTGGTTTAA 1059
||..|||.||||||||||.|
BPUM_0555___y 1082 --TTCATGAAATGGTGGTTTGA 1101
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.