Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00840 and BPUM_0555

See Amino acid alignment / Visit BSNT_00840 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:35
# Commandline: needle
#    -asequence dna-align/BSNT_00840___ydcR.1.24716.seq
#    -bsequence dna-align/BPUM_0555___ydcR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00840___ydcR-BPUM_0555___ydcR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00840___ydcR-BPUM_0555___ydcR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00840___ydcR
# 2: BPUM_0555___ydcR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1172
# Identity:     748/1172 (63.8%)
# Similarity:   748/1172 (63.8%)
# Gaps:         184/1172 (15.7%)
# Score: 2167.5
# 
#
#=======================================

BSNT_00840___      1 ATGGATG--------AGCTAAAACACCCCCCCCACGCTAACAGGGGGGTA     42
                         |||        ||..|||    |||||||||||||||||||||||.
BPUM_0555___y      1 ----ATGACGGGGAAAGTGAAA----CCCCCCCACGCTAACAGGGGGGTT     42

BSNT_00840___     43 GTAATCGTAAAAGAAG-AGAATGAAACCGTTGAAAGTCCTTTAGTATCAA     91
                     .||  ||.|||| ||| |||| ||||      ||||.|..|||..|||||
BPUM_0555___y     43 CTA--CGGAAAA-AAGAAGAA-GAAA------AAAGCCAATTAACATCAA     82

BSNT_00840___     92 TGGTTGACTATATTCGAGTCTCTTTTAAAACTCATGATGTTGACAGAATT    141
                     |||||||||||.|||||.|...|||.|||||.||||||.|||||...||.
BPUM_0555___y     83 TGGTTGACTATGTTCGAATTAGTTTCAAAACACATGATATTGACCATATC    132

BSNT_00840___    142 ATTGAAGAGGTTCTTCATCTTAGCAAAGACTTTATGACTGA------GAA    185
                     ||..||.|.||.||.|||.|||.||.|||.||.|||||.||      ||.
BPUM_0555___y    133 ATCCAAAACGTCCTACATATTAACAGAGAATTCATGACAGAAGAGCCGAG    182

BSNT_00840___    186 ACAATCTGGTTTCTATGGCTACGTTGGCAC--GTATGAACTGGACTATG-    232
                     |      ||.||.|||||.||..|.||.||  |.| ||| |||| |||| 
BPUM_0555___y    183 A------GGCTTTTATGGATATATAGGAACTTGGA-GAA-TGGA-TATGA    223

BSNT_00840___    233 TCAAAGTCTTTTATTCTGCGCCGGATGA-CAACAGAGGTGTTTTGATAGA    281
                     ||||.||.||||||..|||.||.||||| .||| ||||...||||||.||
BPUM_0555___y    224 TCAAGGTTTTTTATAGTGCACCAGATGATGAAC-GAGGGACTTTGATCGA    272

BSNT_00840___    282 AATGTCCGGTCAAGGTTGCCGTCAATTTGAATCCTTCTTGGAATGCCGGA    331
                     |.|.||.|||.||||.||.||.||.||||||||.||.||.|||||..|  
BPUM_0555___y    273 ATTATCTGGTAAAGGATGTCGACAGTTTGAATCATTTTTAGAATGTAG--    320

BSNT_00840___    332 AG--AAAACATGGTACGACTTCTTTCAAGA----TTGCATGCAACAAGGC    375
                     ||  ||.|||||||..||.||.||||||||    |||.||| ||.||||.
BPUM_0555___y    321 AGGTAAGACATGGTTTGATTTTTTTCAAGACTGTTTGAATG-AAAAAGGA    369

BSNT_00840___    376 GGTTCGTTCACTCGCTTTGATTTAGCTATTGATGATAAAAAGACATACTT    425
                     ..|   ||.||..|..|.|||.|.||.||||||||.||.||.|||||.||
BPUM_0555___y    370 AAT---TTTACAAGACTAGATATTGCAATTGATGACAAGAAAACATATTT    416

BSNT_00840___    426 TTCTATACCGGAACTGTTAAAGAAAGCCCAAAAGGGCGAATGCATTTCAC    475
                     |||||||||..|.||.||.||.|.||..||||||||...|||..|||||.
BPUM_0555___y    417 TTCTATACCTAACCTTTTGAAAAGAGTTCAAAAGGGGTTATGTGTTTCAA    466

BSNT_00840___    476 GGTTTAGAAAATCGGATTTCAATGGCTCCTTAGGTCTATC-------TGA    518
                     |||.|.|||.|...|||..|||||||||  ||     |||       .||
BPUM_0555___y    467 GGTATCGAAGAGTTGATAACAATGGCTC--TA-----ATCAGATAGAGGA    509

BSNT_00840___    519 TGGCATTACAGGCGGGACGACAATATATTTCGGTTCTAAAAAGTCAGAAG    568
                     |||.|.|.|||..||.||||||||||||||.||.||||||||.||||||.
BPUM_0555___y    510 TGGAAGTTCAGCAGGAACGACAATATATTTTGGATCTAAAAAATCAGAAT    559

BSNT_00840___    569 CGTACCTTTGCTTTTATGAGAAAAACTATGAACAAGCAGAAAAGTATAAC    618
                     |.||.|||||.||.|||||.|||||.||||||||.||.||.||||.|||.
BPUM_0555___y    560 CCTATCTTTGTTTCTATGAAAAAAATTATGAACAGGCTGATAAGTTTAAT    609

BSNT_00840___    619 AT-TCCGTTA-GAAGAACTAGGCGATTGGAATCGTTATGAATTGCGGCTT    666
                     .| ||  ||| ||.||..|||...|.||||||.|.||||||.|.||.|||
BPUM_0555___y    610 TTATC--TTACGATGATTTAGAGAAATGGAATAGATATGAAATCCGACTT    657

BSNT_00840___    667 AAAAATGAACGTGCACAAGTGGCTATAGATGCTTTATTGAAAACAAAGGA    716
                     |||..||||||.|||||...|||..||..|||   |||.|.|.||   ||
BPUM_0555___y    658 AAATCTGAACGAGCACATTCGGCAGTATGTGC---ATTAATAGCA---GA    701

BSNT_00840___    717 T-TTAACCTT-----AATCGCTATGCAG--ATCATTAATAACTATGTAAG    758
                     | .|||.|||     |||.||.||  ||  ||.||||.||||  ||||  
BPUM_0555___y    702 TCGTAATCTTAAAAAAATTGCAAT--AGGCATTATTAGTAAC--TGTA--    745

BSNT_00840___    759 GTTCG--TTGATGCTGATGAAAACATCACTAGAGA----GCATTGGAAAA    802
                      ||||  |||..|..|| ||||..|..|..|||.|    |.|..||||||
BPUM_0555___y    746 -TTCGCTTTGTAGAAGA-GAAAGGAGAAGGAGACAAAAGGAAAAGGAAAA    793

BSNT_00840___    803 CGAGCCTTTTTTGGTCTGAATTTATAGGTGATGTTGGAAAACTT------    846
                     |.||.|.|||||||..|.|||||||.|||||.||| ||.||.||      
BPUM_0555___y    794 CTAGTCCTTTTTGGCTTAAATTTATTGGTGACGTT-GAGAAGTTGCAATT    842

BSNT_00840___    847 --CCTTTGTACGTCAAACCACAAAAAGACTTCTATCAAAAATCAAGAAAC    894
                       ||.|||       ||||..|||||||.||.|||.||||||||.|.||.
BPUM_0555___y    843 AACCATTG-------AACCTAAAAAAGATTTTTATGAAAAATCACGGAAT    885

BSNT_00840___    895 TGGCTTCGTAACTCTTGTGCTCCCACTATGAA------------------    926
                     |||||.|..||...|||.||.||.||||||||                  
BPUM_0555___y    886 TGGCTGCAAAATAGTTGCGCACCTACTATGAAGGTTATTCTTGAAGTGGA    935

BSNT_00840___    927 -------------AATGGT-GC----TGGAAGCTGAT--------CAGCA    950
                                  |||.|| ||    ||||.| ||||        |||.|
BPUM_0555___y    936 TAGAGTTTTGGGTAATAGTCGCCTATTGGATG-TGATTTTAAATGCAGAA    984

BSNT_00840___    951 --------CTTAGG-GAAAACTGATCTGTCAGATATGA-TCGCAGAAGCT    990
                             .||||| ||.|.| |||||.|.|.|||||| |..|| |.|| 
BPUM_0555___y    985 GAAGGAGCTTTAGGAGATAGC-GATCTATTAAATATGATTTTCA-ATGC-   1031

BSNT_00840___    991 GAACTGGC-GGAAAAACATGAAAAAATGTT--GAATGTGTTTATAGCTGA   1037
                     |||.|..| .||.||.||||||||||||||  .||..|..|||..||..|
BPUM_0555___y   1032 GAAATTACAAGATAAGCATGAAAAAATGTTAGAAACATTCTTAACGCCAA   1081

BSNT_00840___   1038 TGTTGCTGACATGGTGGTTTAA   1059
                       ||..|||.||||||||||.|
BPUM_0555___y   1082 --TTCATGAAATGGTGGTTTGA   1101


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