Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00921 and BPUM_0478

See DNA alignment / Visit BSNT_00921 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:37
# Commandline: needle
#    -asequence pep-align/BSNT_00921___ydfB.1.24716.seq
#    -bsequence pep-align/BPUM_0478___ydfB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00921___ydfB-BPUM_0478___ydfB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00921___ydfB-BPUM_0478___ydfB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00921___ydfB
# 2: BPUM_0478___ydfB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 276
# Identity:     103/276 (37.3%)
# Similarity:   145/276 (52.5%)
# Gaps:          26/276 ( 9.4%)
# Score: 461.0
# 
#
#=======================================

BSNT_00921___      1 -------MQELTKEKYSSLK---TMFDDKYCPTFVYSILDQTIPGAVYAD     40
                            |..|.|::.:::|   ...|..| |.||.:::|..|.|.:|.|
BPUM_0478___y      1 MFGKGDAMYLLEKQRTAAIKEGIRQIDLAY-PVFVDAVMDGFIQGNLYVD     49

BSNT_00921___     41 DQTFPKSFFIGTESGIYFIAGDQGNRDFH--DFIAGYYEEQVKSSKRFTL     88
                     |...|:.:|:.|..|||::||.:.....|  .||...||.|.:.:.|||:
BPUM_0478___y     50 DAMHPRIYFLETACGIYYVAGKREEELSHCSAFIVDVYERQKRQNGRFTV     99

BSNT_00921___     89 FSSSDTWDSVLKPILKDDLNQMRRAAF------SYQPKYPKKTLQLPKGL    132
                     ||::...|.::|..|...||:|.|.|:      ||.|       ....|.
BPUM_0478___y    100 FSANQLTDVMMKKYLGSHLNEMERHAYIFSEVHSYVP-------ASHSGY    142

BSNT_00921___    133 VLKRIDEDIISHSTAFNSAYYEEYWDSVSQFASKGFGFAVLHGNHVVSEC    182
                     .::|.:|.:|..|.||..:|||.||...::|.|||.|.|:|.|..|||||
BPUM_0478___y    143 RVERTNEQVIKASKAFTPSYYEAYWGRAARFLSKGIGVAILDGEDVVSEC    192

BSNT_00921___    183 TSIFLGHNRAEMDIYTLEEYRGLGLAYCVANKFIAFCMENGIVPSWDCDI    232
                     .|||...:|.|:||:..|..||.|||.......|..|:||...|.||||:
BPUM_0478___y    193 VSIFSSEDRVEIDIWKEEACRGKGLAQLAGQHMIRSCLENKRTPHWDCDV    242

BSNT_00921___    233 CNNSSIALAAKLGFKPITEYTIYYSG    258
                     .:.:||.||.||||:....|.::||.
BPUM_0478___y    243 QHLTSIKLAEKLGFQRTKTYRLFYSS    268


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