Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00921 and BPUM_0478

See Amino acid alignment / Visit BSNT_00921 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:37
# Commandline: needle
#    -asequence dna-align/BSNT_00921___ydfB.1.24716.seq
#    -bsequence dna-align/BPUM_0478___ydfB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00921___ydfB-BPUM_0478___ydfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00921___ydfB-BPUM_0478___ydfB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00921___ydfB
# 2: BPUM_0478___ydfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity:     494/938 (52.7%)
# Similarity:   494/938 (52.7%)
# Gaps:         292/938 (31.1%)
# Score: 1045.5
# 
#
#=======================================

BSNT_00921___      1 ----TTGCA-----GGA----AT-TAAC------AAAAGAAAAGTATAGT     30
                         |||.|     |||    || ||.|      |||||.||||.|.||.
BPUM_0478___y      1 ATGTTTGGAAAAGGGGACGCTATGTATCTTTTGGAAAAGCAAAGGACAGC     50

BSNT_00921___     31 AGCTTAAAAACAATGTTTGAT--GACAAAT--ATTGTCCCACA-------     69
                     |||...||||.||.|   |||  |.||.||  ||| |..||.|       
BPUM_0478___y     51 AGCGATAAAAGAAGG---GATTCGTCAGATCGATT-TGGCATATCCAGTG     96

BSNT_00921___     70 TTTGTCTAT----TCAATATTAGAC-----CAAACCATTCCGGGAGCTGT    110
                     |||||..||    |||    |.|||     ||.||.|    |||| .|.|
BPUM_0478___y     97 TTTGTAGATGCGGTCA----TGGACGGTTTCATACAA----GGGA-ATCT    137

BSNT_00921___    111 TTATGCAGATGAT--CA---AACCTTTCCTAAATCGTT--TTTTATAGGA    153
                     |||||.|||||||  ||   |.||  ||.||     ||  ||||.|.|.|
BPUM_0478___y    138 TTATGTAGATGATGCCATGCACCC--TCGTA-----TTTATTTTCTCGAA    180

BSNT_00921___    154 ACTGAATCAGGCATTTATTTTATTGCGGGAGACCA--AGGGAATCGGGA-    200
                     ||.|.||..||||||||||.|.||||.||    ||  ||||||    || 
BPUM_0478___y    181 ACAGCATGCGGCATTTATTATGTTGCAGG----CAAGAGGGAA----GAA    222

BSNT_00921___    201 ---TTTTCA---TGAT-----TTCATTGCAGGAT-ATTATGAAGAACAAG    238
                        .|.|||   ||.|     |||||||.| ||| .|||.|||...||  
BPUM_0478___y    223 GAGCTGTCACACTGCTCGGCGTTCATTGTA-GATGTTTACGAAAGGCA--    269

BSNT_00921___    239 TGAAATCATCAAAA----CGATTTACCTTGTTTTC-----TTCCAGTGAT    279
                      ||||..| |||||    ||.||||||.|.|||||     .||.|.|.|.
BPUM_0478___y    270 -GAAAAGA-CAAAACGGCCGGTTTACCGTATTTTCAGCAAATCAATTAAC    317

BSNT_00921___    280 ACATGGGAT-AGCGTACTGAAACCCATACTGAAAGATGACTTAAACCA--    326
                     |.|||.||| |      |||||         |||.||  |||..|.||  
BPUM_0478___y    318 AGATGTGATGA------TGAAA---------AAATAT--CTTGGATCACA    350

BSNT_00921___    327 ----AATGAGA---AGAG------CTGCATT--------------TTCTT    349
                         |||||||   ||||      .|.||||              |||||
BPUM_0478___y    351 TCTGAATGAGATGGAGAGGCATGCGTACATTTTTTCGGAGGTCCATTCTT    400

BSNT_00921___    350 ATCAACCAAAATATCCCAAAAAGACTTTGCAACTGCCAAAGGGTCTTGTA    399
                     |                          ||...||||      ||||  .|
BPUM_0478___y    401 A--------------------------TGTTCCTGC------GTCT--CA    416

BSNT_00921___    400 TTGA----AAAGAATAGA-CGAAGAC-------------ATCATTTCACA    431
                     ||.|    |.|||.|||| ||  |||             ||||...||  
BPUM_0478___y    417 TTCAGGCTACAGAGTAGAGCG--GACAAATGAACAGGTGATCAAGGCA--    462

BSNT_00921___    432 CAGCACAGCGTTTAAC----AGCGCGTATTATGAGGAGTATT--GGGATT    475
                      |||| ||..|||.||    |||   |||||.||.|..||||  ||||..
BPUM_0478___y    463 -AGCA-AGGCTTTCACGCCTAGC---TATTACGAAGCCTATTGGGGGAGA    507

BSNT_00921___    476 CTGTCTCACAGTTTGCT-TCAAAAGGTTTTGGATTTGCCGTATTACATGG    524
                     ..|.|.|   |.||.|| ||||||||..|||||.|.|||.|.|||.||||
BPUM_0478___y    508 GCGGCGC---GCTTTCTATCAAAAGGAATTGGAGTCGCCATCTTAGATGG    554

BSNT_00921___    525 CAATCATGTAGTAAGTGAGTGTACCTCTATATTTTTAGGGCATAATCGAG    574
                     ..|..|.||.||.|||||.|||..|||.||.||||.|.|..|..||||.|
BPUM_0478___y    555 TGAGGACGTCGTGAGTGAATGTGTCTCCATTTTTTCAAGTGAAGATCGTG    604

BSNT_00921___    575 CGGAAATGGATATCTATACACTTGAGGAATATAGAGGA---CTG------    615
                     .||||||.|||||.|          ||||   ||||||   |||      
BPUM_0478___y    605 TGGAAATCGATATTT----------GGAA---AGAGGAAGCCTGCCGGGG    641

BSNT_00921___    616 ----GGGTTAGCTTA--TTGCG---TAGCAAATAAGTTTAT-AGCGTTTT    655
                         ||.|||||..|  |.|||   .||||.|     |.|| || |..||
BPUM_0478___y    642 AAAAGGCTTAGCACAGCTGGCGGGTCAGCATA-----TGATCAG-GAGTT    685

BSNT_00921___    656 GTATGGAAAAT---GGGATTGTTCCTAGC--TGGGATTGTGATATCTGCA    700
                     ||.|.||||||   .|||     |...||  ||||||||.|||.||  ||
BPUM_0478___y    686 GTCTTGAAAATAAAAGGA-----CACCGCATTGGGATTGCGATGTC--CA    728

BSNT_00921___    701 ACAATT--CGTCCATTGCATTAGCAGCTAAACTAGGGTTTAAGCCGATAA    748
                     |||..|  |.||.||...||||||||..||.|||||.|||.|||.||.| 
BPUM_0478___y    729 ACATCTAACTTCAATCAAATTAGCAGAAAAGCTAGGCTTTCAGCGGACA-    777

BSNT_00921___    749 CGGAATACACTA--------TTTACTACTC-TGGCTAA    777
                        ||.|| |||        |||||..||| ||.    
BPUM_0478___y    778 ---AAAAC-CTATCGATTGTTTTACAGCTCATGA----    807


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