Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00921 and BPUM_0478
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:37
# Commandline: needle
# -asequence dna-align/BSNT_00921___ydfB.1.24716.seq
# -bsequence dna-align/BPUM_0478___ydfB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00921___ydfB-BPUM_0478___ydfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00921___ydfB-BPUM_0478___ydfB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00921___ydfB
# 2: BPUM_0478___ydfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity: 494/938 (52.7%)
# Similarity: 494/938 (52.7%)
# Gaps: 292/938 (31.1%)
# Score: 1045.5
#
#
#=======================================
BSNT_00921___ 1 ----TTGCA-----GGA----AT-TAAC------AAAAGAAAAGTATAGT 30
|||.| ||| || ||.| |||||.||||.|.||.
BPUM_0478___y 1 ATGTTTGGAAAAGGGGACGCTATGTATCTTTTGGAAAAGCAAAGGACAGC 50
BSNT_00921___ 31 AGCTTAAAAACAATGTTTGAT--GACAAAT--ATTGTCCCACA------- 69
|||...||||.||.| ||| |.||.|| ||| |..||.|
BPUM_0478___y 51 AGCGATAAAAGAAGG---GATTCGTCAGATCGATT-TGGCATATCCAGTG 96
BSNT_00921___ 70 TTTGTCTAT----TCAATATTAGAC-----CAAACCATTCCGGGAGCTGT 110
|||||..|| ||| |.||| ||.||.| |||| .|.|
BPUM_0478___y 97 TTTGTAGATGCGGTCA----TGGACGGTTTCATACAA----GGGA-ATCT 137
BSNT_00921___ 111 TTATGCAGATGAT--CA---AACCTTTCCTAAATCGTT--TTTTATAGGA 153
|||||.||||||| || |.|| ||.|| || ||||.|.|.|
BPUM_0478___y 138 TTATGTAGATGATGCCATGCACCC--TCGTA-----TTTATTTTCTCGAA 180
BSNT_00921___ 154 ACTGAATCAGGCATTTATTTTATTGCGGGAGACCA--AGGGAATCGGGA- 200
||.|.||..||||||||||.|.||||.|| || |||||| ||
BPUM_0478___y 181 ACAGCATGCGGCATTTATTATGTTGCAGG----CAAGAGGGAA----GAA 222
BSNT_00921___ 201 ---TTTTCA---TGAT-----TTCATTGCAGGAT-ATTATGAAGAACAAG 238
.|.||| ||.| |||||||.| ||| .|||.|||...||
BPUM_0478___y 223 GAGCTGTCACACTGCTCGGCGTTCATTGTA-GATGTTTACGAAAGGCA-- 269
BSNT_00921___ 239 TGAAATCATCAAAA----CGATTTACCTTGTTTTC-----TTCCAGTGAT 279
||||..| ||||| ||.||||||.|.||||| .||.|.|.|.
BPUM_0478___y 270 -GAAAAGA-CAAAACGGCCGGTTTACCGTATTTTCAGCAAATCAATTAAC 317
BSNT_00921___ 280 ACATGGGAT-AGCGTACTGAAACCCATACTGAAAGATGACTTAAACCA-- 326
|.|||.||| | ||||| |||.|| |||..|.||
BPUM_0478___y 318 AGATGTGATGA------TGAAA---------AAATAT--CTTGGATCACA 350
BSNT_00921___ 327 ----AATGAGA---AGAG------CTGCATT--------------TTCTT 349
||||||| |||| .|.|||| |||||
BPUM_0478___y 351 TCTGAATGAGATGGAGAGGCATGCGTACATTTTTTCGGAGGTCCATTCTT 400
BSNT_00921___ 350 ATCAACCAAAATATCCCAAAAAGACTTTGCAACTGCCAAAGGGTCTTGTA 399
| ||...|||| |||| .|
BPUM_0478___y 401 A--------------------------TGTTCCTGC------GTCT--CA 416
BSNT_00921___ 400 TTGA----AAAGAATAGA-CGAAGAC-------------ATCATTTCACA 431
||.| |.|||.|||| || ||| ||||...||
BPUM_0478___y 417 TTCAGGCTACAGAGTAGAGCG--GACAAATGAACAGGTGATCAAGGCA-- 462
BSNT_00921___ 432 CAGCACAGCGTTTAAC----AGCGCGTATTATGAGGAGTATT--GGGATT 475
|||| ||..|||.|| ||| |||||.||.|..|||| ||||..
BPUM_0478___y 463 -AGCA-AGGCTTTCACGCCTAGC---TATTACGAAGCCTATTGGGGGAGA 507
BSNT_00921___ 476 CTGTCTCACAGTTTGCT-TCAAAAGGTTTTGGATTTGCCGTATTACATGG 524
..|.|.| |.||.|| ||||||||..|||||.|.|||.|.|||.||||
BPUM_0478___y 508 GCGGCGC---GCTTTCTATCAAAAGGAATTGGAGTCGCCATCTTAGATGG 554
BSNT_00921___ 525 CAATCATGTAGTAAGTGAGTGTACCTCTATATTTTTAGGGCATAATCGAG 574
..|..|.||.||.|||||.|||..|||.||.||||.|.|..|..||||.|
BPUM_0478___y 555 TGAGGACGTCGTGAGTGAATGTGTCTCCATTTTTTCAAGTGAAGATCGTG 604
BSNT_00921___ 575 CGGAAATGGATATCTATACACTTGAGGAATATAGAGGA---CTG------ 615
.||||||.|||||.| |||| |||||| |||
BPUM_0478___y 605 TGGAAATCGATATTT----------GGAA---AGAGGAAGCCTGCCGGGG 641
BSNT_00921___ 616 ----GGGTTAGCTTA--TTGCG---TAGCAAATAAGTTTAT-AGCGTTTT 655
||.|||||..| |.||| .||||.| |.|| || |..||
BPUM_0478___y 642 AAAAGGCTTAGCACAGCTGGCGGGTCAGCATA-----TGATCAG-GAGTT 685
BSNT_00921___ 656 GTATGGAAAAT---GGGATTGTTCCTAGC--TGGGATTGTGATATCTGCA 700
||.|.|||||| .||| |...|| ||||||||.|||.|| ||
BPUM_0478___y 686 GTCTTGAAAATAAAAGGA-----CACCGCATTGGGATTGCGATGTC--CA 728
BSNT_00921___ 701 ACAATT--CGTCCATTGCATTAGCAGCTAAACTAGGGTTTAAGCCGATAA 748
|||..| |.||.||...||||||||..||.|||||.|||.|||.||.|
BPUM_0478___y 729 ACATCTAACTTCAATCAAATTAGCAGAAAAGCTAGGCTTTCAGCGGACA- 777
BSNT_00921___ 749 CGGAATACACTA--------TTTACTACTC-TGGCTAA 777
||.|| ||| |||||..||| ||.
BPUM_0478___y 778 ---AAAAC-CTATCGATTGTTTTACAGCTCATGA---- 807
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