Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00684 and BPUM_0361
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:27
# Commandline: needle
# -asequence pep-align/BSNT_00684___gabR.1.24716.seq
# -bsequence pep-align/BPUM_0361___gabR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00684___gabR-BPUM_0361___gabR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00684___gabR-BPUM_0361___gabR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00684___gabR
# 2: BPUM_0361___gabR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 483
# Identity: 267/483 (55.3%)
# Similarity: 350/483 (72.5%)
# Gaps: 13/483 ( 2.7%)
# Score: 1388.5
#
#
#=======================================
BSNT_00684___ 1 MDITITLDRSERADYIYQQIYQKLKKEILSRNLLPHSKVPSKRELAENLK 50
.:||.||::....:||.|||.|:|.|||:|||.||.::|||||||:.|.
BPUM_0361___g 1 -MLTIQLDQTGANGFIYHQIYTKIKGEILNRNLQPHDQLPSKRELADTLN 49
BSNT_00684___ 51 VSVNSVNSAYQQLLAEGYLYAIERKGFFVEELDMF-SAEEHPPFALPDDL 99
|||||||.||||||||||||::||||||||.|:.| .:.:..|.:||.||
BPUM_0361___g 50 VSVNSVNGAYQQLLAEGYLYSVERKGFFVESLETFHESGQLKPSSLPADL 99
BSNT_00684___ 100 KEIHIDQSDWISFSHMSSDTDHFPIKSWFRCEQKAASRSYRRLGDMSHPQ 149
||..|.:.||.||||:|.||.:||.|||.:.||||.|......|::.|||
BPUM_0361___g 100 KEEPIARDDWYSFSHISVDTANFPFKSWLKSEQKAISLHQEAFGELPHPQ 149
BSNT_00684___ 150 GIYEVRAAITRLISLTRGVKCRPEQMIIGAGTQVLMQLLTELLPKEAVYA 199
|:||:|..|.|||.|.|||||.|||:|:.||||.|:..|:.:||.:.||.
BPUM_0361___g 150 GVYELRETIARLIGLARGVKCYPEQLILSAGTQSLIHSLSSILPADKVYG 199
BSNT_00684___ 200 MEEPGYRRMYQLLKNAGKQVKTIMLDEKGMSIAEITRQQPDVLVTTPSHQ 249
:|.|||||:||:||:...|::||.:|.||:.:::|.:::|:||:.|||||
BPUM_0361___g 200 LENPGYRRLYQMLKSNHHQIETIGIDPKGVRMSDIQKKEPNVLIITPSHQ 249
BSNT_00684___ 250 FPSGTIMPVSRRIQLLNWAAEEPRRYIIEDDYDSEFTYDVDSIPALQSLD 299
||:|.|||:|||||||||||::..||||||||||||.|..||||||||||
BPUM_0361___g 250 FPTGVIMPISRRIQLLNWAADQQDRYIIEDDYDSEFKYGTDSIPALQSLD 299
BSNT_00684___ 300 RFQNVIYMGTFSKSLLPGLRISYMVLPPELLRAYK-QRGYDLQTCSSLTQ 348
|:..|||||||||||||||||||||||..|||.|| ::.:.:||.:..||
BPUM_0361___g 300 RYDKVIYMGTFSKSLLPGLRISYMVLPQHLLRRYKEEQHFFIQTANLFTQ 349
BSNT_00684___ 349 LTLQEFIESGEYQKHIKKMKQHYKEKRERLITALEAEFSGEVTVKGANAG 398
.||..||:.|.||:|||:|...|:|||::||..|:..|:..|.:.|.|||
BPUM_0361___g 350 YTLLHFIKDGAYQRHIKRMNGLYEEKRKQLIEELDTVFAENVRIIGENAG 399
BSNT_00684___ 399 LHFVTEFDTRRTEQDILSHAAGLQLEIFGMSRFNLKEN--KRQTGRPALI 446
|||:.||.:.||:.:||..|...:|:::||.||.|.|. ..|.|...|:
BPUM_0361___g 400 LHFIAEFRSNRTQHEILQRAKERKLKMYGMDRFTLDEQLPGHQEGFVPLV 449
BSNT_00684___ 447 IGFARLKEEDVQAGVQRLFKAVYGHKKIPVTGD 479
:||:.::.||::..|:||::|:||.
BPUM_0361___g 450 LGFSHMRPEDIEPAVKRLYEAIYGK-------- 474
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