Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00684 and BPUM_0361
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:27
# Commandline: needle
# -asequence dna-align/BSNT_00684___gabR.1.24716.seq
# -bsequence dna-align/BPUM_0361___gabR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00684___gabR-BPUM_0361___gabR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00684___gabR-BPUM_0361___gabR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00684___gabR
# 2: BPUM_0361___gabR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1596
# Identity: 941/1596 (59.0%)
# Similarity: 941/1596 (59.0%)
# Gaps: 327/1596 (20.5%)
# Score: 2491.5
#
#
#=======================================
BSNT_00684___ 1 ATGGATATCACAATTACACTCGATCGTTCA-GAGCGAGCCGATTATATCT 49
||| .|.||||||..|||.||||...|| |.||.|.|.|||| |||.|
BPUM_0361___g 1 ATG---CTGACAATTCAACTAGATCAAACAGGGGCAAACGGATT-TATTT 46
BSNT_00684___ 50 ATCAGCAAATTTATCA--------AAAGCTGAAA----AAA--GAAATCC 85
||||.|||||||| || ||||.||||| ||| ||||.|.
BPUM_0361___g 47 ATCATCAAATTTA-CACGAAAATTAAAGGTGAAATTTTAAATCGAAACCT 95
BSNT_00684___ 86 TCAGCCGCA--ATCTGCTGCCGCACTCGAAGGTT-CCCTCCAAGCGGGAG 132
||||||||| ||| || || ||.||.||.||.|||
BPUM_0361___g 96 TCAGCCGCACGATC--------------AA--TTACCTTCAAAACGAGAG 129
BSNT_00684___ 133 CTGGCTGA-AAATCTCAAGGTCAGCGTAAATTCAGTGAATTCAGCCTATC 181
.|.||.|| |.|| |.||.||||||||.||||||||||||...||.||||
BPUM_0361___g 130 TTAGCCGATACAT-TAAATGTCAGCGTCAATTCAGTGAATGGCGCATATC 178
BSNT_00684___ 182 AGCAGCTGCTGGCTGAAGGGTATTTGTACGCCATTGAACGAAAGGGTTTC 231
|||||||.||.||.|||||.|||||.||..|..|||||||.||.||||||
BPUM_0361___g 179 AGCAGCTACTTGCCGAAGGATATTTATATTCAGTTGAACGCAAAGGTTTC 228
BSNT_00684___ 232 TTCGTGGAGGAACTAGACATGTTT------TCCGCCGAGG--AGC----A 269
||||||||...|||.||.|.|||| || ||| ||| |
BPUM_0361___g 229 TTCGTGGAATCACTCGAAACGTTTCATGAGTC-----AGGTCAGCTGAAA 273
BSNT_00684___ 270 CCCTCCATTTGCACTGCCGGATGATCTAAAAG-AGATTCACATCG-ACCA 317
||||| |.|.||.||.|..|||.|||||| |||..|| ||.| ||.|
BPUM_0361___g 274 CCCTC----TTCCCTTCCAGCAGATTTAAAAGAAGAGCCA-ATTGCACGA 318
BSNT_00684___ 318 GAGCGATTGGATA-TCGTTTTCACACA----TGAGTTCCGATACAGACCA 362
|| ||||||| || ||.||||||||.| ||.| |||||||.|.|
BPUM_0361___g 319 GA-CGATTGG-TATTCCTTTTCACATATCTCTGTG----GATACAGCCAA 362
BSNT_00684___ 363 TTTTCCGATCAAAAGCTGGTTCCGCT-----GCGAGCAAAAAGCG----G 403
||||||..|.|||||||| ||| |.||.|||||.||| |
BPUM_0361___g 363 TTTTCCTTTTAAAAGCTG-----GCTGAAAAGTGAACAAAAGGCGATCAG 407
BSNT_00684___ 404 CCTCCCGCTCATACC-----GCAGGCTCGGCGATATGTCACATCCGCAAG 448
.|||| ||| ||| .|.||.||..|..|.|||||.||||
BPUM_0361___g 408 TCTCC-------ACCAAGAAGCA--TTTGGTGAGCTTCCGCATCCACAAG 448
BSNT_00684___ 449 GGATATATGAAGTGAGAGCGGCCATTACGAGGCTCAT-----TTCCCTGA 493
|..|.||.||..|..|||...|.|||.|..||.|.|| ||.| |
BPUM_0361___g 449 GCGTGTACGAGCTTCGAGAAACAATTGCCCGGTTAATCGGGCTTGC---A 495
BSNT_00684___ 494 CGAGGGGTGTAAAATGCAGGCCGGAACAAATGATCATAGGGGCAGGCACA 543
| ||||.||.||||||...||.|||||..|.||..||.|.||||||||.
BPUM_0361___g 496 C--GGGGAGTCAAATGCTATCCAGAACAGCTCATTTTAAGTGCAGGCACG 543
BSNT_00684___ 544 CAGGTGCTCATGCAGCTGTTGACTGAGC-TTTTACCCAAGGAAGCC---- 588
|||...||.||.||...||| |...||| ||.|.|| ||||
BPUM_0361___g 544 CAGTCACTTATTCATTCGTT-ATCAAGCATTCTTCC------AGCCGATA 586
BSNT_00684___ 589 --GTGTATGCGATGGAGGAGCCTGGCTACAGGCGCATGTATCAGCTTTTG 636
||.||.|.|.|.||..|.||||||||..|.||..|.|||||
BPUM_0361___g 587 AAGTATACGGGTTAGAAAACCCTGGCTATCGCCGGCTCTATCA------- 629
BSNT_00684___ 637 AAGAATGCCGGAAAA-----------CAAGTAAAGACGAT---CATGCTG 672
|||| |.||||| |||.|..|.||||| || |.
BPUM_0361___g 630 ---AATG-CTGAAAAGCAATCATCATCAAATTGAAACGATTGGCA---TT 672
BSNT_00684___ 673 GATGAAAAAGGCATGTCGATTGCTGA-AATCACCAGACAGCAGCCAGATG 721
|||..||||||..|...|||...||| |.|||..|||.|| ||||..|||
BPUM_0361___g 673 GATCCAAAAGGAGTACGGATGAGTGACATTCAGAAGAAAG-AGCCGAATG 721
BSNT_00684___ 722 TGCTGGTGACCACCCCGTCGCATCAGTTTCCGTCCGGAACGATTATGCCT 771
||.||.|.|..|||||.||.|||||.||.||..|.|||...||||||||.
BPUM_0361___g 722 TGTTGATCATTACCCCCTCACATCAATTCCCAACAGGAGTTATTATGCCA 771
BSNT_00684___ 772 GTATCCAGAAGAATTCAGCTGCTGAACTGGGCAGCCGAGGAGCCGCGCCG 821
.|.|||.|..|.||||||||..|.||||||||||||||..|||....|||
BPUM_0361___g 772 ATTTCCCGGCGGATTCAGCTCTTAAACTGGGCAGCCGATCAGCAAGACCG 821
BSNT_00684___ 822 ATATATCATTGAGGACGATTATGATAGTGAATTCACATATGATGTAGACA 871
.|||||.||||||||.||||||||.||||||||||..||.|....|||||
BPUM_0361___g 822 TTATATTATTGAGGATGATTATGACAGTGAATTCAAGTACGGAACAGACA 871
BSNT_00684___ 872 GTATTCCGGCGCTGCAAAGCCTCGACCGTTTTCAAAATGTCATCTATATG 921
|.||||||||.||||||||..|.||.||.|.|.|.||.|||||.||||||
BPUM_0361___g 872 GCATTCCGGCACTGCAAAGTTTGGATCGATATGACAAAGTCATTTATATG 921
BSNT_00684___ 922 GGAACCTTTTCAAAGTCCCTTCTCCCCGGCTTGCGGATCAGCTATATGGT 971
||||||||||||||.||..|..|.||.|||||..|.||.|||||.|||||
BPUM_0361___g 922 GGAACCTTTTCAAAATCATTGTTGCCAGGCTTAAGAATAAGCTACATGGT 971
BSNT_00684___ 972 GTTGCCGCCTGAGC---TGTTGAG--GGCATACA-----AACAGCGGGGC 1011
|.|.|||| ||| |.||||| |..||| | ||||||
BPUM_0361___g 972 GCTCCCGC---AGCATTTATTGAGACGTTATA-AGGAAGAACAGC----- 1012
BSNT_00684___ 1012 TATGATCTGCAGACTTGCTCATCACTCACACAGC---------------- 1045
||| ||.|||.|||.|||||
BPUM_0361___g 1013 ------------ACT---TCTTCATTCAAACAGCCAACCTTTTTACACAA 1047
BSNT_00684___ 1046 -TCACCCTGCAGGAATTTATCGAGTCTGGTGAATATCAGAAGCATATAAA 1094
.||||||.|...|.|||||..||...||.|..||||||..||||||.||
BPUM_0361___g 1048 TACACCCTTCTTCATTTTATAAAGGACGGGGCGTATCAGCGGCATATTAA 1097
BSNT_00684___ 1095 AAAAATGAAGCAGCATTATA--AAGAAAAGAGAGAACGCCTGATCACCGC 1142
||.|||||| .|..||||| |.||||||.| || |.||.|.|
BPUM_0361___g 1098 AAGAATGAA--TGGTTTATATGAGGAAAAGCG-GA-------AGCAACTC 1137
BSNT_00684___ 1143 TTTAGAAGCAGAGTTCAGCGGA----GAGGTTACCGTAAAA--------- 1179
.|| |.||||.|| || |.|.||.|.| ||||
BPUM_0361___g 1138 ATT----GAAGAGCTC----GACACGGTGTTTGCTG-AAAATGTGCGAAT 1178
BSNT_00684___ 1180 ----GGGGCAAATGCGGGGCTGCATTTT--------GTTACCGAATTTGA 1217
||||.||||||.||.||.|||||| ||| ||| ||.|
BPUM_0361___g 1179 TATTGGGGAAAATGCTGGACTTCATTTTATCGCAGAGTT-CCG---TTCA 1224
BSNT_00684___ 1218 TACCAGGCGCACCGAACAAGACATCCTGTCACATGCTGCCGGGCTGC--- 1264
.|| |||||..||||.||.| |.|.||| .||.|| |
BPUM_0361___g 1225 AAC----CGCACGCAACATGAGA---TTTTACA-----GCGAGC--CAAA 1260
BSNT_00684___ 1265 -------AGCTTGAAATATTCGGAATGAGCCGATTTA-ACTTGAAGGAAA 1306
||||..||||.|..||||||..|||.|||| .|||||.| |
BPUM_0361___g 1261 GAAAGAAAGCTGAAAATGTATGGAATGGACCGTTTTACCCTTGATG---A 1307
BSNT_00684___ 1307 ACAA-----GCGGCAAACGGGCAGGC----CTGCTCTCATTATCGGCTTT 1347
.||| |.||| |.|.||.|||| .|.|.|||.|..|||||||.
BPUM_0361___g 1308 GCAATTACCGGGGC-ATCAGGAAGGCTTTGTTCCGCTCGTCCTCGGCTTC 1356
BSNT_00684___ 1348 GCACGGCTGAAGGA--AGAAGATGTTCAGGCGGGTGTGCAGCGGCTTTTC 1395
.|.|...||| || |||.|||.||.||.|||..||..|.||.||.|..
BPUM_0361___g 1357 TCTCATATGA--GACCAGAGGATATTGAGCCGGCGGTAAAACGTCTGTAT 1404
BSNT_00684___ 1396 AAAGCGGTTTA-CGGACATAAAAAAATCCCCGTTACAGGGGATTGA 1440
.|.|||.|||| .|||.||||
BPUM_0361___g 1405 GAGGCGATTTATGGGAAATAA------------------------- 1425
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