Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00568 and BPUM_0300

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:22
# Commandline: needle
#    -asequence pep-align/BSNT_00568___ycgM.1.24716.seq
#    -bsequence pep-align/BPUM_0300___ycgM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00568___ycgM-BPUM_0300___ycgM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00568___ycgM-BPUM_0300___ycgM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00568___ycgM
# 2: BPUM_0300___ycgM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 305
# Identity:     225/305 (73.8%)
# Similarity:   261/305 (85.6%)
# Gaps:           2/305 ( 0.7%)
# Score: 1202.0
# 
#
#=======================================

BSNT_00568___      1 --MITRDFFLFLSKSGFLNKMARNWGSRVAAGKIIGGNDFNSSIPTIRQL     48
                       .:||:||||||||..||.:||||||.||:.|||||.||.|:|..|::|
BPUM_0300___y      1 MESVTRNFFLFLSKSSLLNHIARNWGSAVASKKIIGGKDFESAISVIKRL     50

BSNT_00568___     49 NSQGLSVTVDHLGEFVNSAEVARERTEECIQTIATIADQELNSHVSLKMT     98
                     |.||::||||||||||..||:|.|||:||||||..||:.:||||||||||
BPUM_0300___y     51 NDQGMAVTVDHLGEFVTKAEIANERTDECIQTIQRIAEAKLNSHVSLKMT    100

BSNT_00568___     99 SLGLDIDMDLVYENMTKILQTAEKHKIMVTIDMEDEVRCQKTLDIFKDFR    148
                     |||||||.||||.||.:||.|||||:||||||||||.||||||||||:.:
BPUM_0300___y    101 SLGLDIDDDLVYRNMKRILDTAEKHRIMVTIDMEDEQRCQKTLDIFKEMK    150

BSNT_00568___    149 KKYEHVSTVLQAYLYRTEKDIDDLDSLNPFLRLVKGAYKESEKVAFPEKS    198
                     .:||:|||||||||||||||:|||:.|.|||||||||||||.:||:|.|.
BPUM_0300___y    151 SQYEYVSTVLQAYLYRTEKDLDDLNELQPFLRLVKGAYKESAEVAYPNKK    200

BSNT_00568___    199 DVDENYKKIIRKQLLNGHYTAIATHDDKMIDFTKQLAKEHGIANDKFEFQ    248
                     |||:||||:|.||||.|:|||||||||:||:|||.:.|:|.|...:||||
BPUM_0300___y    201 DVDQNYKKLIEKQLLTGNYTAIATHDDQMIEFTKNIVKKHNIPTSQFEFQ    250

BSNT_00568___    249 MLYGMRSQTQLSLVKEGYNMRVYLPYGEDWYGYFMRRLAERPSNIAFAFK    298
                     |||||||:||.:||||||.||||.|||.:||||:||||||||:|||||.|
BPUM_0300___y    251 MLYGMRSETQQALVKEGYQMRVYTPYGREWYGYYMRRLAERPANIAFALK    300

BSNT_00568___    299 GMTKK    303
                     |||||
BPUM_0300___y    301 GMTKK    305


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