Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00568 and BPUM_0300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:22
# Commandline: needle
# -asequence dna-align/BSNT_00568___ycgM.1.24716.seq
# -bsequence dna-align/BPUM_0300___ycgM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00568___ycgM-BPUM_0300___ycgM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00568___ycgM-BPUM_0300___ycgM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00568___ycgM
# 2: BPUM_0300___ycgM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 958
# Identity: 654/958 (68.3%)
# Similarity: 654/958 (68.3%)
# Gaps: 86/958 ( 9.0%)
# Score: 2072.5
#
#
#=======================================
BSNT_00568___ 1 -----GT-GATCACAAGAGATTTTTTCTTATTTTTATCCAAAAGCGGCTT 44
|| |.||||||||.||||.|||||.|||||.||.||.|||.|
BPUM_0300___y 1 ATGGAGTCGGTCACAAGAAATTTCTTCTTGTTTTTGTCAAAGAGCAG--- 47
BSNT_00568___ 45 TCTC---AATAAAATGGCGAGGAACTGGGGAAGCCGGGTAGCAGCGGGTA 91
|||| ||..|.||.||..|.||.||||||||....||.|||.|....|
BPUM_0300___y 48 TCTCTTGAACCATATAGCTCGTAATTGGGGAAGTGCTGTTGCATCTAAGA 97
BSNT_00568___ 92 AAATTATCGGCGGGAATGACTTTAACAGTTCAATCCCGACCATTCGACAG 141
||||.|||||.|||||.||.|||.|.||..|.|||.|...||||..|| |
BPUM_0300___y 98 AAATCATCGGTGGGAAAGATTTTGAGAGCGCTATCTCTGTCATTAAAC-G 146
BSNT_00568___ 142 CTTAACAG-CCAAGGCTTGTCAGTTACTGTCGATCATTTAGGCGAGTTTG 190
.||||..| .|||||..||.|.|||||.||||||||..|.||.|||||||
BPUM_0300___y 147 ATTAAATGATCAAGGAATGGCTGTTACAGTCGATCACCTTGGTGAGTTTG 196
BSNT_00568___ 191 TGA-ACAGCGCCGAGGTCGCACGGGAGCGTACGGAAGAGTGCATTCAAAC 239
|.| |.|| ||.|||.|.|||...|||||.|||||.|||||.||||||||
BPUM_0300___y 197 TCACAAAG-GCAGAGATTGCAAATGAGCGGACGGATGAGTGTATTCAAAC 245
BSNT_00568___ 240 CATTGCGACCATCGCGGAT--CAG-----GAGCTGAACTCACACGTTTCT 282
|||| || |||||| ||| .||||.||.||.|||||.||.
BPUM_0300___y 246 CATT-----CA--GCGGATTGCAGAGGCCAAGCTCAATTCCCACGTGTCA 288
BSNT_00568___ 283 TTAAAAATGACGTCTTTAGGTTTGGATATAGA-TATGGATTTGGTGTATG 331
.|.||||||||.||..|.||..|||||||.|| .|| ||..|.||||||.
BPUM_0300___y 289 CTCAAAATGACATCACTCGGCCTGGATATTGACGAT-GACCTTGTGTATC 337
BSNT_00568___ 332 AAAATATGACAAAAATCCTTCAG--ACGGCCGAGAAACATAAAATCATGG 379
..|||||| |||..|..||.|| |||||.||.|||||....|||||||
BPUM_0300___y 338 GCAATATG--AAACGTATTTTAGATACGGCAGAAAAACACCGTATCATGG 385
BSNT_00568___ 380 TCACCATTGACATGGAGGACGAAGTCA--GATGCCAGAAAACGCTTGATA 427
|.||.||.||.||||||||.||| || |.||.||.||||||||.||.|
BPUM_0300___y 386 TGACAATCGATATGGAGGATGAA--CAGCGCTGTCAAAAAACGCTGGACA 433
BSNT_00568___ 428 TTTTCAAAGATTTCAGAAA--GAAATACGAGCATGTGAGCACAGTGCTGC 475
||||.|||||..| |||| ..||||.|||.||||.||.||.||.||||
BPUM_0300___y 434 TTTTTAAAGAGAT--GAAATCTCAATATGAGTATGTCAGTACGGTCCTGC 481
BSNT_00568___ 476 AAGCCTATCTGTACCGGACGGAAAAAGACATTGACGATTTGGATTCTTTA 525
|.||.|||.|||||.|.||.|||||.||..||||.|| |.|.|
BPUM_0300___y 482 AGGCGTATTTGTACAGAACAGAAAAGGATCTTGATGA--------CCTCA 523
BSNT_00568___ 526 A--------ACCCGTTCCTTCGCCTTGTAAAAGGAGCTTATAAAGAATCA 567
| |.||.||..|.||.||||||||.||.||.|||||.|||||.
BPUM_0300___y 524 ATGAGCTGCAACCATTTTTACGACTTGTAAAGGGTGCCTATAAGGAATCC 573
BSNT_00568___ 568 GAAAAAGTAGCTTTCCCGGAGAAAAGCGATGTCGATGAAAATTACAAAAA 617
|...||||.||.|..||..|.||||..||.||.|||.|.||||||||.||
BPUM_0300___y 574 GCCGAAGTGGCGTATCCAAACAAAAAAGACGTTGATCAGAATTACAAGAA 623
BSNT_00568___ 618 AATCATCCGAAAGCAGCT-CTTAAACGGTCACTATACAGCGATTGCCACA 666
|.|.|||..||||||..| ||.|.| ||..||||||||||.|||||.|||
BPUM_0300___y 624 ACTGATCGAAAAGCAATTACTCACA-GGGAACTATACAGCCATTGCGACA 672
BSNT_00568___ 667 CATGACGACAAAATGATCGACTTTACAAAGCAGCTTGCCAAGGAACATGG 716
||||||||..||||||||||.||.||.||..|..|||..||..||||
BPUM_0300___y 673 CATGACGATCAAATGATCGAGTTCACGAAAAATATTGTGAAAAAACA--- 719
BSNT_00568___ 717 CATTGCCAAT-----GACA----AGTTTGAATTTCAGATGCTGTACGGCA 757
|||| |||| ||||.||||||||.||||||||.||||
BPUM_0300___y 720 ------CAATATACCGACAAGTCAGTTCGAATTTCAAATGCTGTATGGCA 763
BSNT_00568___ 758 TGCGGTCGCAAACCCAGCTCAG--CCTCGTAAAAGAAGGTTATAACATGA 805
||.|.||..||||.||| ||| .||.||.||.|||||.|||.|.||||
BPUM_0300___y 764 TGAGATCAGAAACGCAG--CAGGCACTTGTGAAGGAAGGCTATCAAATGA 811
BSNT_00568___ 806 GAGTCTACCTGCCATACGG-CGAGGATTGGTACGGCTATTTTATGAGACG 854
|.||||||...||.||.|| ||| ||.|||||.|||||.|..||||||||
BPUM_0300___y 812 GGGTCTACACACCGTATGGACGA-GAGTGGTATGGCTACTACATGAGACG 860
BSNT_00568___ 855 CCTTGCAGAACGTCCGTCAAACATTGCATTTGCTTTCAAAGGAATGACAA 904
.|||||||||||.|||.||||||||||.||||||||.|||||||||||.|
BPUM_0300___y 861 TCTTGCAGAACGGCCGGCAAACATTGCCTTTGCTTTAAAAGGAATGACGA 910
BSNT_00568___ 905 AGAAGTAA 912
|.||.|||
BPUM_0300___y 911 AAAAATAA 918
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