Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05915 and BPUM_0169

See DNA alignment / Visit BSNT_05915 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:29
# Commandline: needle
#    -asequence pep-align/BSNT_05915___yxlF.1.24716.seq
#    -bsequence pep-align/BPUM_0169.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05915___yxlF-BPUM_0169.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05915___yxlF-BPUM_0169.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05915___yxlF
# 2: BPUM_0169
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 319
# Identity:     127/319 (39.8%)
# Similarity:   185/319 (58.0%)
# Gaps:          38/319 (11.9%)
# Score: 559.0
# 
#
#=======================================

BSNT_05915___      1 --MLSIESLCKSYRHHEAVKNVSFHVNENECVALLGPNGAGKTTTLQMLA     48
                       ||....|.|||..||.:|:|||.|.|..||..||.||||||||:::|.
BPUM_0169          1 MNMLECHGLTKSYGRHEVLKDVSFSVGEVGCVGFLGANGAGKTTTIRILT     50

BSNT_05915___     49 GLLSPTSGTIKLLG---EKKLD--RRLIGYLPQYPAFYSWMTANEFLTFA     93
                     ||..||||.||:.|   .|.:|  ..:|||.||:||||..||..|::.:.
BPUM_0169         51 GLARPTSGVIKVAGMDVTKDMDDISHVIGYCPQHPAFYQDMTGQEWMHWV    100

BSNT_05915___     94 GRLSGLSKRKCQEEIGEMLEFVGLHEAAHKRIGGYSGGMKQRLGLAQALL    143
                     |.|..|.|...:.:..|:|:...::||..:.||.|||||||||.:||||:
BPUM_0169        101 GGLFHLEKNTIRSKTEELLKLCRVYEAKDRAIGSYSGGMKQRLAIAQALI    150

BSNT_05915___    144 HKPQFLILDEPVSALDPTGRFEVLDIMRELKKHMAVLFSTHVLHDAEQVC    193
                     :.|:.||||||||||||.||.::|.::..||..|.:..|||:|.|.|:|.
BPUM_0169        151 NSPKVLILDEPVSALDPMGRKDILTLIERLKHEMLIFMSTHILDDIERVA    200

BSNT_05915___    194 DQVVIMKNGEISWKGELQELK------------QQQQTNVFTLSVKEKLE    231
                     |.::::.:|:|.....::::|            :||.|.:..| :||:  
BPUM_0169        201 DHIIMINSGKIEMSSSMKQIKEDYIQPVIEFQLEQQNTKLMAL-LKER--    247

BSNT_05915___    232 GWLEE-----KPYVSAIVYKNPSQAVFELPDIHAGRSLLSDCIRKGLTVT    276
                     .|:||     ..|  .:...|...|:.|||      :|:::  ..|: :.
BPUM_0169        248 DWVEECMETGDAY--QVRVNNQQTALKELP------ALITE--TDGV-LL    286

BSNT_05915___    277 RFEQKTESLEDVYLKVVHA    295
                     .:.....:|||:::|||.|
BPUM_0169        287 HYRLSKLTLEDIFMKVVTA    305


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