Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05915 and BPUM_0169
See
Amino acid alignment /
Visit
BSNT_05915 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_05915___yxlF.1.24716.seq
# -bsequence dna-align/BPUM_0169.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05915___yxlF-BPUM_0169.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05915___yxlF-BPUM_0169.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05915___yxlF
# 2: BPUM_0169
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1075
# Identity: 562/1075 (52.3%)
# Similarity: 562/1075 (52.3%)
# Gaps: 344/1075 (32.0%)
# Score: 1292.5
#
#
#=======================================
BSNT_05915___ 1 ATGCTGTCTATTGAATCATTATG-----------------CAAATCGTAC 33
|||||| ||..|| .||||||||.
BPUM_0169 1 ----------TTGAAT-ATGTTGGAGTGTCACGGGCTGACGAAATCGTAT 39
BSNT_05915___ 34 AGGCACCATGAAGCTGT--AAAGAATG--TCAGTTTTC--------ACGT 71
.|.|..||||||| ||| |||| ||| || |||||| |.||
BPUM_0169 40 GGCCGACATGAAG-TGTTAAAAG-ATGTTTC-GTTTTCTGTTGGGGAGGT 86
BSNT_05915___ 72 GAATGAAAATGAGTGTGTCGCACTATTAGGACCTAATGGAGCCGGCAAAA 121
||..|||||.|...|.||||||.|.||||||||.||.||.|
BPUM_0169 87 ---------TGGATGTGTTGGCTTTTTAGGAGCCAATGGAGCGGGGAAGA 127
BSNT_05915___ 122 CCACGACTCTGCAAATGCTGGCCGGACTGCTT--TCG-CCAACCTCTGGA 168
|.|||||..|.|..||..||.|.|| |||| ||| ||.||.|||||.
BPUM_0169 128 CAACGACGATTCGGATTTTGACGGG---GCTTGCTCGTCCTACGTCTGGT 174
BSNT_05915___ 169 ACCATAAAGCT-----GTTAGGA-GAGAAAAAG---CTGGATCGGCGTT- 208
..|||||||.| ||..||| |.||.|||| .||||| |.|.||
BPUM_0169 175 GTCATAAAGGTGGCGGGTATGGATGTGACAAAGGACATGGAT-GACATTA 223
BSNT_05915___ 209 ------TGATTGGGTACCTCCCGCAGTATCCTGCTTTTTATTCGTGGATG 252
||||.||.||....||||||.|||||||.||||||..|...|||
BPUM_0169 224 GTCATGTGATCGGCTATTGTCCGCAGCATCCTGCATTTTATCAGGATATG 273
BSNT_05915___ 253 AC--CGCA------AATGAATT--------------TTTGACATTTGCGG 280
|| .||| .|||.||| ||| ||||||
BPUM_0169 274 ACGGGGCAGGAGTGGATGCATTGGGTTGGCGGGTTATTT--CATTTG--- 318
BSNT_05915___ 281 GGAGACTGTCCGGCCTTTCGAAGAGAAAA----------TGCCA----AG 316
||||||| |.||| ||
BPUM_0169 319 ----------------------GAGAAAAACACCATTCGTTCCAAAACAG 346
BSNT_05915___ 317 AGGAAATCGGTGAGATGCTG--GAA--TTTGTCGGTTTGCACGAAGCGGC 362
|||| |||| ||| |||| |.||.||.|.||.|||
BPUM_0169 347 AGGA------------GCTGTTGAAGCTTTG-CCGTGTGTATGAGGCG-- 381
BSNT_05915___ 363 GCACAAAAGGATC--------GGGGGCTATTCAGGAGGCATGAAACAAAG 404
||||||| ||..|||||...|||||||||||.|||||
BPUM_0169 382 ------AAGGATCGTGCCATTGGCAGCTATAGTGGAGGCATGAAGCAAAG 425
BSNT_05915___ 405 ACTCGGTCTGGCACAGGCACTGCTCCATAAACCGCAGTTTTTGATATTGG 454
|||.|...|.||.|||||||||.||.|.|..|||.||.||.||||.||||
BPUM_0169 426 ACTTGCCATTGCGCAGGCACTGATCAACAGTCCGAAGGTTCTGATCTTGG 475
BSNT_05915___ 455 ATGAACCGGTGTCTGCTCTTGATCCGACAGGGCGGTTCGAGGTGCTGGAC 504
|||||||.||||||||.||||||||.|..|||.|....||..|.|| |||
BPUM_0169 476 ATGAACCTGTGTCTGCACTTGATCCCATGGGGAGAAAAGACATCCT-GAC 524
BSNT_05915___ 505 ATAATGCGGGAGCTGAAAAAGCAT---ATGGCCGTTCTGT-TTTCTACAC 550
.| ||...||||....||||||| || ||.|.|||.| |.||.||.|
BPUM_0169 525 TT--TGATTGAGCGTCTAAAGCATGAGAT-GCTGATCTTTATGTCGACCC 571
BSNT_05915___ 551 ATGTTTTGCACGATG-CAGAGCAGGTGTG--TGATCAAGTGGTGATTATG 597
||.|||| .|||| ||..|.|.||||| ||||||..|..|.||.||.
BPUM_0169 572 ATATTTT---AGATGACATTGAACGTGTGGCTGATCATATTATCATGATC 618
BSNT_05915___ 598 AAAAACGG------TGAAATTTC-------ATGGA-----------AAGG 623
||.|.||| ||||||.|| |||.| |||.
BPUM_0169 619 AACAGCGGCAAAATTGAAATGTCCTCTTCGATGAAACAGATCAAAGAAGA 668
BSNT_05915___ 624 CGAGTTACAG-----GAGCTGAA--------ACAACAGCAGCAAACGAAC 660
|.|..|.||| || .|||| |.||||.|||.|.|||||
BPUM_0169 669 CTATATCCAGCCCGTGA-TTGAATTTCAATTAGAACAACAGAATACGAA- 716
BSNT_05915___ 661 GTTTTTAC-----CCTTTCAGTGAAAGAGAAGCTGGAAGGTTGGCTTGAA 705
|| .|||| ||.||| |||| |.||| ||||.|.||.
BPUM_0169 717 ------ACTAATGGCTTT--GTTAAA-AGAA-CGGGA---TTGGGTGGAG 753
BSNT_05915___ 706 GAGAAGC----------------CTTACGTCTCA---GCTATTGTCTATA 736
|| |.|| |||| ||| ||.| ||| |
BPUM_0169 754 GA-ATGCATGGAGACAGGAGACGCTTA----TCAGGTGCGA--GTC---A 793
BSNT_05915___ 737 AGAATCCGTCCCAAGCGGTTTT---CGAGCTGCCTGATATACA-CGCTG- 781
|.|||| ..|||.|||..|| .||.|||||.|.|.| || |.|||
BPUM_0169 794 ACAATC---AACAAACGGCATTGAAGGAACTGCCGGCTCT-CATCACTGA 839
BSNT_05915___ 782 ----GCCGGT---------CATTATTAAGTGACTGTATCCGAAAGGGATT 818
|.|||| |||||| .||||.|.| ||| .|
BPUM_0169 840 AACTGACGGTGTTCTCCTCCATTAT----CGACTATCT----AAG---CT 878
BSNT_05915___ 819 GACCGTCACCCGCTTTGAACAGAAAACGGAGTCTCTAGAAGACGTCTAT- 867
|| ||||| ||||| |||
BPUM_0169 879 GA--------CGCTT----------------------GAAGA----TATT 894
BSNT_05915___ 868 ---CTAAAGGTGGTGCAC-GCATGA 888
.|.|||||.||| || ||||||
BPUM_0169 895 TTCATGAAGGTTGTG-ACGGCATGA 918
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.