Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_00197 and BPUM_0083

See DNA alignment / Visit BSNT_00197 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:07
# Commandline: needle
#    -asequence pep-align/BSNT_00197___sigH.1.24716.seq
#    -bsequence pep-align/BPUM_0083___sigH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00197___sigH-BPUM_0083___sigH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00197___sigH-BPUM_0083___sigH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00197___sigH
# 2: BPUM_0083___sigH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 218
# Identity:     200/218 (91.7%)
# Similarity:   213/218 (97.7%)
# Gaps:           0/218 ( 0.0%)
# Score: 1017.0
# 
#
#=======================================

BSNT_00197___      1 MNLQNNKGKFNKEQFCQLEDEQVIEKVHVGDSDALDYLITKYRNFVRAKA     50
                     |||.|:|.|..:|||||||||||||:||||||||||||||||||||||||
BPUM_0083___s      1 MNLNNSKDKSIREQFCQLEDEQVIERVHVGDSDALDYLITKYRNFVRAKA     50

BSNT_00197___     51 RSYFLIGADREDIVQEGMIGLYKSIRDFKEDKLTSFKAFAELCITRQIIT    100
                     ||||||||||||||||||||||||||||:|||||||||||||||||||||
BPUM_0083___s     51 RSYFLIGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCITRQIIT    100

BSNT_00197___    101 AIKTATRQKHIPLNSYVSLDKPIFDEESDRTLLDVISGAKTLNPEEMIIN    150
                     |||||||||||||||||||||||:||||||||||||||||.||||::||:
BPUM_0083___s    101 AIKTATRQKHIPLNSYVSLDKPIYDEESDRTLLDVISGAKALNPEDLIIS    150

BSNT_00197___    151 QEEFDDIEMKMGELLSDLERKVLVLYLDGRSYQEISDELNRHVKSIDNAL    200
                     :|||||||||||||||:|||||||||||||||||||::||||||||||||
BPUM_0083___s    151 KEEFDDIEMKMGELLSELERKVLVLYLDGRSYQEISEDLNRHVKSIDNAL    200

BSNT_00197___    201 QRVKRKLEKYLEIREISL    218
                     ||||||||||||:|||||
BPUM_0083___s    201 QRVKRKLEKYLELREISL    218


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.