Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00197 and BPUM_0083
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:07
# Commandline: needle
# -asequence dna-align/BSNT_00197___sigH.1.24716.seq
# -bsequence dna-align/BPUM_0083___sigH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00197___sigH-BPUM_0083___sigH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00197___sigH-BPUM_0083___sigH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00197___sigH
# 2: BPUM_0083___sigH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity: 526/659 (79.8%)
# Similarity: 526/659 (79.8%)
# Gaps: 4/659 ( 0.6%)
# Score: 2074.0
#
#
#=======================================
BSNT_00197___ 1 GTGAATCTACAGAACAACAAGGGAAAATTCAACAAAGAGCAGTTTTGCCA 50
|||||||||.|.||||.|||||..||||.||.||.||||||.||||||||
BPUM_0083___s 1 GTGAATCTAAACAACAGCAAGGATAAATCCATCAGAGAGCAATTTTGCCA 50
BSNT_00197___ 51 GTTGGAGGACGAGCAGGTCATTGAAAAGGTTCATGTTGGGGACAGTGATG 100
||||||.||.||.||.||||||||||.|||||||||.||.||.|||||||
BPUM_0083___s 51 GTTGGAAGATGAACAAGTCATTGAAAGGGTTCATGTCGGAGATAGTGATG 100
BSNT_00197___ 101 CGTTAGATTACTTGATTACGAAGTACCGAAACTTTGTTCGGGCAAAAGCA 150
||.||||||||||.||.|||||.||||||||.|||||.||.|||||||||
BPUM_0083___s 101 CGCTAGATTACTTAATAACGAAATACCGAAATTTTGTACGTGCAAAAGCA 150
BSNT_00197___ 151 AGATCCTATTTCTTAATAGGGGCGGACAGAGAGGATATTGTTCAGGAAGG 200
|||||.||||||||.||.||.|||||..|||||||.|||||.||.||.||
BPUM_0083___s 151 AGATCTTATTTCTTGATTGGAGCGGATCGAGAGGACATTGTCCAAGAGGG 200
BSNT_00197___ 201 CATGATAGGCCTCTATAAGTCTATTCGTGACTTCAAAGAGGACAAGCTTA 250
.|||||.||.||.|||||||||||.||.||.||||.||||||||||||||
BPUM_0083___s 201 GATGATCGGACTTTATAAGTCTATCCGCGATTTCAGAGAGGACAAGCTTA 250
BSNT_00197___ 251 CCTCATTCAAAGCTTTCGCAGAATTATGTATTACCCGCCAAATTATTACC 300
|.|||||.||.|||||.|||||||||||||||||||||||||||||.|||
BPUM_0083___s 251 CTTCATTTAAGGCTTTTGCAGAATTATGTATTACCCGCCAAATTATCACC 300
BSNT_00197___ 301 GCAATAAAGACAGCTACTCGCCAGAAACACATTCCTTTGAATTCCTACGT 350
|||||.||.||||||||||||||.|||||.||.||.||.||||||||.||
BPUM_0083___s 301 GCAATTAAAACAGCTACTCGCCAAAAACATATCCCGTTAAATTCCTATGT 350
BSNT_00197___ 351 CTCATTAGATAAACCGATTTTTGATGAAGAATCAGACCGAACGCTGCTGG 400
.|||||||||||.||.||.|.||||||||||||||||.||||..||.|||
BPUM_0083___s 351 ATCATTAGATAAGCCAATATATGATGAAGAATCAGACAGAACATTGTTGG 400
BSNT_00197___ 401 ATGTCATTTCAGGAGCGAAAAC-CTTAAATCCTGAGGAAATGATCATTAA 449
|.||||||||.||.||.|||.| ||| ||.||.||.||..|.|||||||.
BPUM_0083___s 401 ACGTCATTTCCGGTGCTAAAGCGCTT-AACCCAGAAGATTTAATCATTAG 449
BSNT_00197___ 450 TCAGGAAGAATTTGATGATATTGAAATGAAAATGGGAGAACTATTAAGTG 499
..|.|||||||||||||||||.||||||||.|||||.||||||.||||.|
BPUM_0083___s 450 CAAAGAAGAATTTGATGATATCGAAATGAAGATGGGTGAACTACTAAGCG 499
BSNT_00197___ 500 ATTTAGAGAGAAAAGTACTCGT-CTTATATCTCGACGGGAGAAGTTACCA 548
|..|.||.|||||.||.||.|| ||| ||.||.||.||.|||...||.||
BPUM_0083___s 500 AGCTGGAAAGAAAGGTTCTTGTGCTT-TACCTTGATGGCAGATCCTATCA 548
BSNT_00197___ 549 AGAGATTTCTGATGAACTGAACCGACATGTGAAATCGATCGACAATGCCC 598
||||||||||||.||..|.|||||.|||||||||||.||.||.||.||.|
BPUM_0083___s 549 AGAGATTTCTGAAGATTTAAACCGTCATGTGAAATCAATTGATAACGCAC 598
BSNT_00197___ 599 TTCAGCGTGTGAAACGCAAGCTGGAGAAGTACTTGGAAATTCGCGAAATC 648
|.||..|.||.||..|.||..|.|||||.||.||.||..|||||||.||.
BPUM_0083___s 599 TCCAAAGAGTAAAGAGAAAATTAGAGAAATATTTAGAGCTTCGCGAGATT 648
BSNT_00197___ 649 AGTTTGTAA 657
|||.|.|||
BPUM_0083___s 649 AGTCTCTAA 657
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