Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00126 and BPUM_0056

See DNA alignment / Visit BSNT_00126 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:04
# Commandline: needle
#    -asequence pep-align/BSNT_00126___yacD.1.24716.seq
#    -bsequence pep-align/BPUM_0056___yacD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00126___yacD-BPUM_0056___yacD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00126___yacD-BPUM_0056___yacD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00126___yacD
# 2: BPUM_0056___yacD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 304
# Identity:     196/304 (64.5%)
# Similarity:   248/304 (81.6%)
# Gaps:           9/304 ( 3.0%)
# Score: 1043.5
# 
#
#=======================================

BSNT_00126___      1 --MKSRTIWTIILGALLVCCIAVAYTLTKSQTGASS----SGESIATIGG     44
                       :|:|.:||.||..|::..:.:||.|||||...:|    |||.||:||.
BPUM_0056___y      1 MRLKARVVWTFILVLLMINAVVIAYVLTKSQMSQASSNGKSGEEIASIGK     50

BSNT_00126___     45 KSVTREEWLKEMEDQYGKSTLEDMINVRVVEQLAKKNNLKISKSEVDREF     94
                     :.|||:||||:|||:|||:|||.|||.:||.||||:|.|::|..|::||.
BPUM_0056___y     51 EKVTRQEWLKKMEDRYGKATLEQMINQKVVNQLAKENKLEVSSKEINREL    100

BSNT_00126___     95 LLIKAVNNSFYEDEHTTEKEWKDQIRYNILLEELLTRDIDISNKELESFY    144
                     |::|||:|:||||.||:||:|.:||||.||||:|||||..:|.||.:|||
BPUM_0056___y    101 LMLKAVSNNFYEDGHTSEKDWTEQIRYQILLEQLLTRDAVVSEKEAKSFY    150

BSNT_00126___    145 NKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAERSTDR    194
                     .|||:|||:||||||||||||.:.||..|||:|||||||||||||||.||
BPUM_0056___y    151 EKNKDLYQYDDSYRIRHIVVKTKGEAENVLKDLKGGSSFEAVAAERSIDR    200

BSNT_00126___    195 YTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEPIKVNNGYAIIQ    244
                     ||||||||||||||..::||:.||:||:.|:.|||::|||:..|||||||
BPUM_0056___y    201 YTSPYGGDLGFVTEEQESIPALYIQEAQKLQPDEWTKEPIETKNGYAIIQ    250

BSNT_00126___    245 LKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVKTLWKEADVSWFY-GE    293
                     |||||..|:||::|||:||:|||||:.||:||.||||||||.|:||| ||
BPUM_0056___y    251 LKEKLDGRSFSYEEVKNQIKRQIAMEDLGEKANVKTLWKEAKVTWFYDGE    300

BSNT_00126___    294 KSTK    297
                     :.  
BPUM_0056___y    301 QD--    302


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