Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00126 and BPUM_0056
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:04
# Commandline: needle
# -asequence dna-align/BSNT_00126___yacD.1.24716.seq
# -bsequence dna-align/BPUM_0056___yacD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00126___yacD-BPUM_0056___yacD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00126___yacD-BPUM_0056___yacD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00126___yacD
# 2: BPUM_0056___yacD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 958
# Identity: 632/958 (66.0%)
# Similarity: 632/958 (66.0%)
# Gaps: 113/958 (11.8%)
# Score: 1971.5
#
#
#=======================================
BSNT_00126___ 1 ------TTGAAATCAAGAACAATCTGGACCATTATTTTAGGGGCGCTGTT 44
.|||||.|||||....|.|||||..|||||.|.| ||||
BPUM_0056___y 1 ATGAGACTGAAAGCAAGAGTGGTATGGACATTTATTCTCG------TGTT 44
BSNT_00126___ 45 GGTT--------TGCTGTATTGCTGTTGCATATACGCTGACGAAATCCCA 86
|.|| |||.| |||.|.||||||||....|.||.||.||.||
BPUM_0056___y 45 GCTTATGATCAATGCCG--TTGTTATTGCATATGTATTAACAAAGTCGCA 92
BSNT_00126___ 87 A-----ACCGGCGCATCGTCA---------TCCGGTGAGTCTATTGCGAC 122
| ||.| ||.||.||| ..||||||....||||||.|
BPUM_0056___y 93 AATGTCACAG--GCTTCTTCAAACGGGAAGAGCGGTGAAGAAATTGCGTC 140
BSNT_00126___ 123 TATCGG---AGGCAAGAGTGTGACAAGAGAAGAATGGCTGAAAGAA-ATG 168
.||.|| ||..||| ||||||.|..|||||||| |.|||||| |||
BPUM_0056___y 141 GATTGGAAAAGAAAAG---GTGACACGTCAAGAATGG-TTAAAGAAGATG 186
BSNT_00126___ 169 GAAGATCAGTATGGTAAGTCAACGCTTGAAGATATGATCAATGTCCGA-- 216
|||||.|..|||||.|||.||||.|||||..|.|||||.|| ||.||
BPUM_0056___y 187 GAAGACCGCTATGGAAAGGCAACACTTGAGCAAATGATTAA--TCAGAAG 234
BSNT_00126___ 217 GTTGTTGAGCAGCTGGCTAAAAAGAACAACCTTAAAATATC--CAAAAGC 264
||.|||.|.|||||.||.|||.|.|||||.|||.|..|.|| |||||
BPUM_0056___y 235 GTGGTTAACCAGCTTGCGAAAGAAAACAAGCTTGAGGTGTCCTCAAAA-- 282
BSNT_00126___ 265 GAAGTTGATCGTGAGTTTTTGCTGATTAAAGCGGT---CAATAATTCCTT 311
|||.|..|||||||.||..||.||.|||||||||| .|||||| ||
BPUM_0056___y 283 GAAATCAATCGTGAATTGCTGATGCTTAAAGCGGTATCTAATAAT---TT 329
BSNT_00126___ 312 TTACGAAGATGAACATACGACGGAGAAAGAGTGGAAAGACCAAATTCGTT 361
.||.|||||||.||||||||..||.|||||.||||.|||.||.|||||||
BPUM_0056___y 330 CTATGAAGATGGACATACGAGTGAAAAAGATTGGACAGAACAGATTCGTT 379
BSNT_00126___ 362 ATAATATCCTCCTTGAGGAATTGTTAACAAGGGA---TATCGATATCTCA 408
||.|.||..|..|.|||.|..|.|||||.||.|| |.||| |.|||.|
BPUM_0056___y 380 ATCAAATTTTATTGGAGCAGCTTTTAACGAGAGATGCTGTCG-TTTCTGA 428
BSNT_00126___ 409 AACAAAGAATTGGAATCATTCTATAATAAAAATAAGGAACTATATCAGTT 458
| ||||||..|.||||.||.|||.|.|||||.|||||..|||||||.|.
BPUM_0056___y 429 A--AAAGAAGCGAAATCCTTTTATGAAAAAAACAAGGACTTATATCAATA 476
BSNT_00126___ 459 TGATGATTCGTATCGAATTCGGCACATTGTTGTAAAGGATGAAGAAGAAG 508
|||||||||.||.||.|||||.||.||.||.||.||| |.||.|.|
BPUM_0056___y 477 TGATGATTCATACCGTATTCGTCATATCGTCGTGAAG-----ACAAAAGG 521
BSNT_00126___ 509 CGA----GAGAA-GTCCTGAAAGAACTGAAAGGCGGATCAAGCTTTGAAG 553
||| ||.|| ||..||||.||.||||||||||||||.|||||.||||
BPUM_0056___y 522 CGAAGCTGAAAACGTATTGAAGGATCTGAAAGGCGGATCTAGCTTCGAAG 571
BSNT_00126___ 554 CTGTCGCTGCCGAAAGATCCACTGACAGATATACATCACCATACGGCGGA 603
|.||.||.||.|||.|.||.|.|||..|.||.||.||.|||||.||||||
BPUM_0056___y 572 CGGTGGCAGCTGAACGCTCTATTGATCGCTACACCTCTCCATATGGCGGA 621
BSNT_00126___ 604 GATTTAGGTTTTGTCACAGAGGCATCAGACAACATTCCATCAGCATACAT 653
|||.|.||.|||||.|||||.|.|..|||.|..||.|||.|...||||||
BPUM_0056___y 622 GATCTTGGGTTTGTGACAGAAGAACAAGAAAGTATCCCAGCCCTATACAT 671
BSNT_00126___ 654 TGAAGAGGCGAAAACACTCAAAGAG---------GATGAATGGTCTCAGG 694
..||||.| |||||| || |||||||||.|..|.|
BPUM_0056___y 672 ACAAGAAG--------CTCAAA-AGCTTCAGCCAGATGAATGGACAAAAG 712
BSNT_00126___ 695 AACCAATAAAGGTCAACAACGGATATGCCATTATCCAGCTGAAAGAAAAA 744
||||.||..||..|||.|||||.|||||||||||.||..|||||||||||
BPUM_0056___y 713 AACCGATCGAGACCAAAAACGGGTATGCCATTATTCAATTGAAAGAAAAA 762
BSNT_00126___ 745 CTA-AAGGCAAGAACG----TTCTCATTTGATGAAGTAAAGGACCAGATC 789
.|| |.||| || |||||.|.|||.|||||.||..|.||||||
BPUM_0056___y 763 TTAGATGGC-----CGCTCCTTCTCGTATGAAGAAGTCAAAAATCAGATC 807
BSNT_00126___ 790 AGACGGCAAATCGCAATGGATCAGCTAGGCGATAAAGCGACAGTTAAGAC 839
|.|.||||.||.||.|||||..|.|||||.||.||.||||..||.||.||
BPUM_0056___y 808 AAAAGGCAGATTGCTATGGAAGATCTAGGTGAAAAGGCGAATGTCAAAAC 857
BSNT_00126___ 840 ACTTTGGAAAGAAGCCGATGTATCTTGGTTTT---ATGGGGAAAAAAGTA 886
.||.|||||||||||..|.||..|.||||||| ||||.| |..||.|
BPUM_0056___y 858 CCTGTGGAAAGAAGCAAAAGTCACATGGTTTTACGATGGCG--AGCAGGA 905
BSNT_00126___ 887 CTAAGTGA 894
||||
BPUM_0056___y 906 CTAA---- 909
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