Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00008 and BPUM_0007

See DNA alignment / Visit BSNT_00008 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:57
# Commandline: needle
#    -asequence pep-align/BSNT_00008___gyrA.1.24716.seq
#    -bsequence pep-align/BPUM_0007___gyrA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00008___gyrA-BPUM_0007___gyrA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00008___gyrA-BPUM_0007___gyrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00008___gyrA
# 2: BPUM_0007___gyrA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 839
# Identity:     705/839 (84.0%)
# Similarity:   776/839 (92.5%)
# Gaps:          18/839 ( 2.1%)
# Score: 3624.0
# 
#
#=======================================

BSNT_00008___      1 MSEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRIL     50
                     ||||:||.|||:||||||||||||||||||||||||||||||||||||||
BPUM_0007___g      1 MSEQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRIL     50

BSNT_00008___     51 YAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYR    100
                     |||||||||||||:||||||||||||||||||||||||:|||||||||||
BPUM_0007___g     51 YAMNDLGMTSDKPFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYR    100

BSNT_00008___    101 YMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY    150
                     ||||||||||||||||.||||||||||:||||||||||||||||||||||
BPUM_0007___g    101 YMLVDGHGNFGSVDGDGAAAMRYTEARLSKISMEILRDITKDTIDYQDNY    150

BSNT_00008___    151 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSE    200
                     |||||||:|||:||||||||||.|||||||||||||||||:||||||:|:
BPUM_0007___g    151 DGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQLGEVIDGVLAISQ    200

BSNT_00008___    201 NPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIE    250
                     ||::|..|||::||||||||||||:||||||||||:||||||:|||:.||
BPUM_0007___g    201 NPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSITLRAKSNIE    250

BSNT_00008___    251 QTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTG    300
                     :|||||:||::.|:|||||||:||||||||||||||:|||||||||||.|
BPUM_0007___g    251 ETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNG    300

BSNT_00008___    301 MRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQC    350
                     ||||||:|||||.:|:||||||||.||||||||||||||||||||:||||
BPUM_0007___g    301 MRIVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQC    350

BSNT_00008___    351 LEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNS    400
                     ||:||:||||:|||||||||||||||||||||||:||||||.||:|||.|
BPUM_0007___g    351 LEYYLEHQKVIIRRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGS    400

BSNT_00008___    401 QTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKL    450
                     |||||||.||:|.:||:||||||||||||||||||||||||:||:.||.|
BPUM_0007___g    401 QTAEIARNGLMENYSLSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDL    450

BSNT_00008___    451 IAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDL    500
                     |||||.|||:..|||||||||||||||||||.|||||||:|:||||||||
BPUM_0007___g    451 IAELKAILADNEKVLEIIREELTEIKERFNDTRRTEIVTAGIETIEDEDL    500

BSNT_00008___    501 IERENIVVTLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLIS    550
                     |..||||:|||||||:||||||||||||||||||||||||||||||.|||
BPUM_0007___g    501 IPVENIVITLTHNGYIKRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLIS    550

BSNT_00008___    551 TSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA    600
                     ||||||||||||||||||||||||||:|||||||||||||||||||||||
BPUM_0007___g    551 TSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWINA    600

BSNT_00008___    601 IIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELM    650
                     ||||:||:...||||||:|||||||:||||||||||||||||||::||||
BPUM_0007___g    601 IIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDEDELM    650

BSNT_00008___    651 GVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVV    700
                     .||||:|.||||||||.|:||||.|||||||||||||||||||::||:||
BPUM_0007___g    651 AVRLTNGEKQIIIGTKKGMLIRFDETDVREMGRTAAGVKGITLSEDDIVV    700

BSNT_00008___    701 GMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQL    750
                     ||||||.:::|||||||||||.||.:|||.||||||||||.|||:|||.|
BPUM_0007___g    701 GMEILEPDANVLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPL    750

BSNT_00008___    751 VAVKAT--KGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEE    798
                     ||||||  :.||||||||.|||:|||.::|||.||||||||||||:.:||
BPUM_0007___g    751 VAVKATNAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEE    800

BSNT_00008___    799 HVATVALVEKNEED--ENEEEQEEV--------------    821
                     |||||||||::.||  :|||..|.:              
BPUM_0007___g    801 HVATVALVEQSPEDDEDNEENVENIENIENIESDQEQSE    839


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_00008 and BPUM_0007

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
