Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00008 and BPUM_0007
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:57
# Commandline: needle
# -asequence dna-align/BSNT_00008___gyrA.1.24716.seq
# -bsequence dna-align/BPUM_0007___gyrA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00008___gyrA-BPUM_0007___gyrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00008___gyrA-BPUM_0007___gyrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00008___gyrA
# 2: BPUM_0007___gyrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2557
# Identity: 1875/2557 (73.3%)
# Similarity: 1875/2557 (73.3%)
# Gaps: 128/2557 ( 5.0%)
# Score: 6811.0
#
#
#=======================================
BSNT_00008___ 1 ATGAGTGAACAAAACACACCACAAGTTCGTGAAATAAATATCAGTCAGGA 50
.|||||||||||.|.||||||.|.||.||.|||.|.|||||.||||||||
BPUM_0007___g 1 GTGAGTGAACAACATACACCAAATGTACGCGAAGTGAATATTAGTCAGGA 50
BSNT_00008___ 51 AATGCGTACGTCCTTCTTGGATTATGCAATGAGCGTTATCGTGTCCCGTG 100
||||||||||||.||.||.||||||||||||||.||.||.|||||.||||
BPUM_0007___g 51 AATGCGTACGTCTTTTTTAGATTATGCAATGAGTGTGATTGTGTCGCGTG 100
BSNT_00008___ 101 CTCTTCCGGATGTTCGAGACGGTTTAAAACCGGTTCATAGACGGATTTTG 150
|..|.||.|||||.||.|||||.|||||.||.||.|||.||.|.||||||
BPUM_0007___g 101 CATTACCAGATGTGCGTGACGGATTAAAGCCCGTGCATCGAAGAATTTTG 150
BSNT_00008___ 151 TATGCAATGAATGATTTAGGCATGACAAGTGACAAGCCTTATAAAAAATC 200
|||||.||||||||..||||.|||||||||||.||.||.|.|||.|||||
BPUM_0007___g 151 TATGCGATGAATGACCTAGGTATGACAAGTGATAAACCATTTAAGAAATC 200
BSNT_00008___ 201 CGCGCGTATCGTTGGAGAAGTTATCGGGAAATACCACCCGCACGGTGATT 250
.||.||||||||.||.|||||||||||.||.||.|||||.||.|||||
BPUM_0007___g 201 TGCACGTATCGTCGGGGAAGTTATCGGTAAGTATCACCCTCATGGTGA-- 248
BSNT_00008___ 251 CA--GCGGTATATGAATCCATGGTTAGAATGGCTCAGGATTTCAACTACC 298
|| ||.|||||.|||.|.||||||.|.|||||.||.||.||||||||.|
BPUM_0007___g 249 CAGTGCTGTATACGAAGCGATGGTTCGTATGGCGCAAGACTTCAACTATC 298
BSNT_00008___ 299 GTTATATGCTCGTTGACGGTCATGGAAACTTCGGTTCTGTTGACGGAGAC 348
||||||||.|.||.||.||||||||||||||.|||||.||.||.||||||
BPUM_0007___g 299 GTTATATGTTAGTAGATGGTCATGGAAACTTTGGTTCAGTCGATGGAGAC 348
BSNT_00008___ 349 TCAGCGGCGGCCATGCGTTATACAGAAGCAAGAATGTCTAAAATCTCAAT 398
..|||.|||||.|||||||||||.||.|||.|..|.||.||.||.||.||
BPUM_0007___g 349 GGAGCAGCGGCGATGCGTTATACCGAGGCACGTCTATCGAAGATTTCTAT 398
BSNT_00008___ 399 GGAGATTCTTCGCGACATCACAAAAGACACAATCGATTACCAGGATAACT 448
||||||.||.||.||.|||||.||.||.||.||.|||||.||||||||||
BPUM_0007___g 399 GGAGATCCTCCGTGATATCACTAAGGATACTATTGATTATCAGGATAACT 448
BSNT_00008___ 449 ATGACGGGTCA--GAAAGAGAACCTGTCGTTATGCCTTCAAGGTTCCCGA 496
||||||| || ||||||||.||..|.||.||||||.||||.|||||.|
BPUM_0007___g 449 ATGACGG--CAGTGAAAGAGAGCCAATGGTGATGCCTGCAAGATTCCCTA 496
BSNT_00008___ 497 ATCTGCTCGTGAACGGTGCTGCCGGCATTGCGGTAGGTATGGCAACAAAC 546
|..||.|.||.|||||.||..|.||.|||||.|||||.|||||.||.||.
BPUM_0007___g 497 ACTTGTTGGTCAACGGAGCGACAGGAATTGCTGTAGGAATGGCGACCAAT 546
BSNT_00008___ 547 ATTCCTCCTCACCAGCTGGGAGAAATCATTGACGGTGTACTTGCTGTCAG 596
|||||.||.|||||.||.||.|||.|.|||||.||.|||.|.|||.||||
BPUM_0007___g 547 ATTCCGCCGCACCAACTAGGTGAAGTGATTGATGGGGTATTGGCTATCAG 596
BSNT_00008___ 597 TGAGAATCCGGACATTACCATTCCAGAGCTTATGGAAGTCATTCCAGGGC 646
|.|.||.|||||.||.||||..|..|||||||||||..||||||||||.|
BPUM_0007___g 597 TCAAAACCCGGAAATGACCACACAGGAGCTTATGGACATCATTCCAGGTC 646
BSNT_00008___ 647 CTGATTTCCCGACCGCGGGTCAAATCTTGGGACGCAGCGGTATCCGGAAA 696
|.||||||||.||.||.|||||||||.|.||.||.||.|||||.|||||.
BPUM_0007___g 647 CAGATTTCCCAACAGCAGGTCAAATCATTGGCCGAAGTGGTATTCGGAAG 696
BSNT_00008___ 697 GCATACGAATCAGGCCGAGGCTCTATCACGATCCGGGCAAAAGCTGAGAT 746
||.||.|||.||||.||.||||||||.||..|..|.||||||.|..|.||
BPUM_0007___g 697 GCGTATGAAACAGGGCGCGGCTCTATTACATTAAGAGCAAAATCGAATAT 746
BSNT_00008___ 747 CGAACAAACATCTTCGGGTAAAGAAAGAATTATCGTTA-CA--GAGTTAC 793
.||..||||||||...||||||.|..|.||| |||| || |||.|.|
BPUM_0007___g 747 TGAGGAAACATCTAGCGGTAAACAGCGCATT---GTTATCAATGAGATTC 793
BSNT_00008___ 794 CTTACCAAGTAAATAAGGCGAAATTAATTGAGAAAATTGCTGATCTCGTA 843
||||||||||.||.||.||....||||||||.||||||||||||||.|||
BPUM_0007___g 794 CTTACCAAGTCAACAAAGCCCGTTTAATTGAAAAAATTGCTGATCTTGTA 843
BSNT_00008___ 844 AGGGACAAAAAGATAGAGGGTATCACAGATCTGCGTGATGAGTCAGATCG 893
.|.||.||||||||.||.||.||.||||||.||||||||||.|||||.||
BPUM_0007___g 844 CGTGATAAAAAGATTGATGGCATTACAGATTTGCGTGATGAATCAGACCG 893
BSNT_00008___ 894 TACAGGTATGAGAATTGTCATTGAAATAAGACGCGATGCCAATGCAAATG 943
||..||||||.|.||||||||||||.|..|..|.||.||.||.|...|||
BPUM_0007___g 894 TAATGGTATGCGTATTGTCATTGAACTGCGTAGAGACGCAAACGTCCATG 943
BSNT_00008___ 944 TCATCTTAAACAATCTGTACAAACAAACTGCTCTACAAACATCTTTTGGC 993
|..|.|||||||||||.||.||||||||..|.||.|||||.||.|||||.
BPUM_0007___g 944 TTCTATTAAACAATCTTTATAAACAAACGACACTTCAAACGTCATTTGGT 993
BSNT_00008___ 994 ATCAACCTGCTTGCACTTGTTGATGGCCAGCCGAAAGTTTTAACTCTTAA 1043
||||||.|..|.||||||||||||||.|||||.|||||.||..|.||.||
BPUM_0007___g 994 ATCAACTTATTGGCACTTGTTGATGGGCAGCCAAAAGTCTTGTCCCTCAA 1043
BSNT_00008___ 1044 GCAATGCCTGGAGCATTACCTTGACCACCAAAAAGTTGTCATTAGACGCC 1093
.|||||.||.|||.||||.||.||.||.||||||||..|||||.|..|..
BPUM_0007___g 1044 ACAATGTCTTGAGTATTATCTAGAGCATCAAAAAGTGATCATTCGCAGAA 1093
BSNT_00008___ 1094 GTACTGCTTATGAATTGCGTAAAGCAGAAGCGAGAGCTCATATCTTGGAA 1143
|.||.||.|||||..||||||||||||||||.|||||.||.||.||.|||
BPUM_0007___g 1094 GAACAGCGTATGAGCTGCGTAAAGCAGAAGCAAGAGCACACATTTTAGAA 1143
BSNT_00008___ 1144 GGATTGAGAGTTGCACTGGATCATCTCGATGCAGTTATCTCCCTTATCCG 1193
||..|||||.|||||||.|||||..|.||||.|||.| |..|||
BPUM_0007___g 1144 GGTCTGAGAATTGCACTTGATCACTTAGATGAAGTCA--TTGCTT----- 1186
BSNT_00008___ 1194 TAAT-------TCTCAAACGGCTGAAATTGCGAGAACAGGTTTAATTGAA 1236
|||| ||||||||.||.|||||||||||||..|||||.||.|||
BPUM_0007___g 1187 TAATTAGAGGCTCTCAAACTGCGGAAATTGCGAGAAATGGTTTGATGGAA 1236
BSNT_00008___ 1237 CAATTCTCAC-TGACAGAGAAGCAAGCACAAGCGATCCTTGACATGAGGC 1285
||.|.|..| ||.|.||.||.||.|||||.||.||.|||||.|||.|.|
BPUM_0007___g 1237 -AACTATAGCTTGTCTGAAAAACAGGCACAGGCTATTCTTGATATGCGAC 1285
BSNT_00008___ 1286 TCCAGCGTTTAACGGGACTGGAACGTGAAAAGATCGAAGAAGAATACCAA 1335
|.||||||||.||.||.||.|||||.||||||||.|||||.|||||..||
BPUM_0007___g 1286 TTCAGCGTTTGACTGGTCTAGAACGAGAAAAGATAGAAGATGAATATAAA 1335
BSNT_00008___ 1336 TCTCTTGTTAAATTAATTGCAGAGCTAAAAGACATCTTGGCA---AATGA 1382
...||||||.|.||.|||||.||..||||||.|||.||.||| ||||
BPUM_0007___g 1336 GGACTTGTTGATTTGATTGCTGAATTAAAAGCCATTTTAGCAGACAATG- 1384
BSNT_00008___ 1383 ATATAAAGTGCTTGAGATCATTCGTGAAGAACTCACGGAAATCAAAGAGC 1432
|.|||||.|||||.||||||.|.||||||.|.||.|||||.|||||.|
BPUM_0007___g 1385 --AGAAAGTACTTGAAATCATTAGAGAAGAATTAACAGAAATTAAAGAAC 1432
BSNT_00008___ 1433 GTTTTAACGATGAAAGACGTACTGAGATCGTCACTTCTGGACTGGAGACA 1482
|.||.||.|||....|.||||||||.||.||.||..|.||..|.||.|||
BPUM_0007___g 1433 GCTTCAATGATACGCGCCGTACTGAAATTGTGACAGCGGGTATCGAAACA 1482
BSNT_00008___ 1483 ATTGAAGATGAAGATCTCATCGAGAGA--------GAAAATATCGTAGTT 1524
||||||||.||||||.| || |||||.|||||..||
BPUM_0007___g 1483 ATTGAAGACGAAGATTT--------GATTCCTGTTGAAAACATCGTGATT 1524
BSNT_00008___ 1525 ACTCTGACGCACAACGGATACGTCAAACGTCTTCCTGCATCAACTTACCG 1574
||.||.|||||.||.||.||..||||.|||||.||.||.||.||.|||||
BPUM_0007___g 1525 ACGCTCACGCATAATGGTTATATCAAGCGTCTCCCAGCTTCTACATACCG 1574
BSNT_00008___ 1575 CAGTCAAAAACGGGGCGGAAAAGGTGTACAAGGTATGGGAACAAACGAAG 1624
||||||||||.|.|||||.||||||||.|||||.||||||||.|||||||
BPUM_0007___g 1575 CAGTCAAAAAAGAGGCGGTAAAGGTGTCCAAGGAATGGGAACCAACGAAG 1624
BSNT_00008___ 1625 ATGATTTCGTTGAACATTTGATATCTACGTCAACTCATGACACGATTCTC 1674
||||||||||||||||.|||||.||.||.||.||.||.||.||||||||.
BPUM_0007___g 1625 ATGATTTCGTTGAACAGTTGATTTCAACATCGACCCACGATACGATTCTT 1674
BSNT_00008___ 1675 TTCTTCTCGAACAAGGGGAAAGTGTATCGTGCAAAAGGGTATGAAATCCC 1724
||||||||.||.||.|||||.||.||||||||.||||||||.|||||.||
BPUM_0007___g 1675 TTCTTCTCTAATAAAGGGAAGGTTTATCGTGCGAAAGGGTACGAAATTCC 1724
BSNT_00008___ 1725 TGAATACGGCAGAACGGCAAAAGGAATCCCGATTATTAACCTGCTGGAGG 1774
|||||.|||..|.|||||.|||||.||.|||||.|||||.||.||.||.|
BPUM_0007___g 1725 TGAATTCGGACGGACGGCGAAAGGGATTCCGATCATTAATCTTCTTGAAG 1774
BSNT_00008___ 1775 TAGAAAAGGGTGAGTGGATCAACGCGATTATTCCAGTCACGGAATTCAAT 1824
||||||||||.||.|||||.|||||.|||||||||||.|..|||||..||
BPUM_0007___g 1775 TAGAAAAGGGAGAATGGATTAACGCCATTATTCCAGTAAGCGAATTTGAT 1824
BSNT_00008___ 1825 GCGGAGCTTTACCTTTTCTTCACTACAAAGCATGGGGTTTCAAAACGAAC 1874
|...|...|||.||.|||||.||.||||..||.||.||.||||||||.||
BPUM_0007___g 1825 GAAAATTCTTATCTCTTCTTTACAACAAGACACGGTGTATCAAAACGGAC 1874
BSNT_00008___ 1875 ATCACTATCTCAATTCGCTAATATCCGCAACAATGGTCTAATCGCTCTGA 1924
..||.|.||.||.||||||||.||.||.|||||.|||||.||.||.||.|
BPUM_0007___g 1875 GACATTGTCGCAGTTCGCTAACATTCGAAACAACGGTCTTATTGCACTTA 1924
BSNT_00008___ 1925 GTCTTCGTGAAGACGATGAACTGATGGGTGTACGTCTGACTGATGGCACA 1974
|.||||||||.||.|||||||||||||.|||.|||.|.||..||||...|
BPUM_0007___g 1925 GCCTTCGTGACGAAGATGAACTGATGGCTGTTCGTTTAACCAATGGAGAA 1974
BSNT_00008___ 1975 AAACAAATCATCATTGGAACGAAAAACGGTTTACTGATCCG-TTTCCCTG 2023
||||||||||||||||||||||||||.||..|.|||||||| |||..| |
BPUM_0007___g 1975 AAACAAATCATCATTGGAACGAAAAAAGGAATGCTGATCCGATTTGAC-G 2023
BSNT_00008___ 2024 AAACAGATGTTCGGGAGATGGGAAGAACTGCGGCGGGCGTAAAAGGCATC 2073
|.|||||||||||.||.||||||.|.||.||.||.||.||.|||||.|||
BPUM_0007___g 2024 AGACAGATGTTCGTGAAATGGGACGTACGGCAGCTGGAGTGAAAGGGATC 2073
BSNT_00008___ 2074 ACCCTGACGGATGACGACGTTGTTGTCGGCATGGAGATATTAGAGGAAGA 2123
||.||..|.||.||.|||.||||.||.||||||||.||..|.|||..|||
BPUM_0007___g 2074 ACACTTTCCGAAGATGACATTGTCGTAGGCATGGAAATCCTTGAGCCAGA 2123
BSNT_00008___ 2124 ATCACACGTCCTTATCGTTACTGAAAAAGGGTACGGAAAACGAACTCCGG 2173
..||.|||||.|.||.||.|||||||||||.|||||.||||.|||.|
BPUM_0007___g 2124 TGCAAACGTCTTGATTGTAACTGAAAAAGGATACGGCAAACTAACCC--- 2170
BSNT_00008___ 2174 CTGAAGAGTACAGA--ACC-----CAAAGCCGGGGCGGAAAAGGACTCAA 2216
||||| |.||| ||| |||||.||.|||||.|||||.||.||
BPUM_0007___g 2171 CTGAA----AAAGAATACCGTGTTCAAAGTCGTGGCGGTAAAGGTCTTAA 2216
BSNT_00008___ 2217 AACAGCG-AAAATCACCGAGAACAACGGCCAACTAGTAGCAGTGAAAGC- 2264
||| |.| ||||||||.||.||.|||||.|.|||.||.|||||||||||
BPUM_0007___g 2217 AAC-GTGCAAAATCACTGACAATAACGGTCCACTTGTCGCAGTGAAAGCA 2265
BSNT_00008___ 2265 -----TACTAAAGGTGAAGAGGATCTAATGATTATTACAGCTAGCGGCGT 2309
|.||.|||..|||||.||..|.|||||||||||||..|||||.||
BPUM_0007___g 2266 ACGAATGCTGAAGCCGAAGAAGACTTGATGATTATTACAGGAAGCGGTGT 2315
BSNT_00008___ 2310 ACTCATCAGAATGGACATCAATGATATCTCCATCACCGGACGTGTCACTC 2359
|.||||..|.||||.|.|...|||.||.||.|..||.||.||.||.||||
BPUM_0007___g 2316 AATCATTCGTATGGCCGTTTCTGACATTTCAACAACAGGTCGAGTTACTC 2365
BSNT_00008___ 2360 AAGGTGTGCGTCTCATCAGAATGGCAGAAGAAGAGCATGTTGCTACAGTA 2409
|||||||.||.||.|||.|..|.|..||.||.||.|||||.||.|||||.
BPUM_0007___g 2366 AAGGTGTTCGCCTAATCCGTCTCGGTGATGAGGAACATGTCGCAACAGTG 2415
BSNT_00008___ 2410 GCTTTAGTAGAGA----------AAAACGAAGAAGAT------GAGAATG 2443
||.|||||.|| | ||.||||.|||||| |||||.|
BPUM_0007___g 2416 GCATTAGTTGA-ACAATCACCAGAAGACGATGAAGATAATGAAGAGAACG 2464
BSNT_00008___ 2444 AAGAAGAACA----------AGAAGA---AGTGTGA-------------- 2466
.|||| |||| ||||.| ||.||.|
BPUM_0007___g 2465 TAGAA-AACATAGAAAACATAGAAAACATAGAGTCAGATCAAGAGCAATC 2513
BSNT_00008___ 2466 ------- 2466
BPUM_0007___g 2514 TGAGTAA 2520
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