Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05677 and BL05358

See DNA alignment / Visit BSNT_05677 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:47
# Commandline: needle
#    -asequence pep-align/BSNT_05677___rpoE.1.5803.seq
#    -bsequence pep-align/BL05358___rpoE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05677___rpoE-BL05358___rpoE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05677___rpoE-BL05358___rpoE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05677___rpoE
# 2: BL05358___rpoE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 172
# Identity:     130/172 (75.6%)
# Similarity:   157/172 (91.3%)
# Gaps:           5/172 ( 2.9%)
# Score: 678.0
# 
#
#=======================================

BSNT_05677___      1 MGIKQYSQEELKEMALVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEE     50
                     |.:||||:|:||||||||||:|:|.|||||:.||||.:::|||||:.|||
BL05358___rpo      1 MSLKQYSEEQLKEMALVEIAYEIFSEHKKPITFQELTDQVASLLGMGKEE     50

BSNT_05677___     51 LGDRIAQFYTDLNIDGRFLALSDQTWGLRSWYPYDQLDEETQPTVKAKKK    100
                     |.||||||||||||||||||||||||||||||||||||||||||||||||
BL05358___rpo     51 LEDRIAQFYTDLNIDGRFLALSDQTWGLRSWYPYDQLDEETQPTVKAKKK    100

BSNT_05677___    101 KAKKAVEEDLDLDEFEEIDEDDLDLDEVEEELDLEADDFDDEDLDEDDDD    150
                     ||||||||||||||||||||||:.||:|||:||::||:||:.| :.|||:
BL05358___rpo    101 KAKKAVEEDLDLDEFEEIDEDDILLDDVEEDLDIDADEFDEID-EADDDE    149

BSNT_05677___    151 L-EIEEDIVDED---DEEEEIK    168
                     | ::|::|:|:|   ||||:.:
BL05358___rpo    150 LDDLEDEILDDDEDFDEEEDEE    171


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