Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05677 and BL05358
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:47
# Commandline: needle
# -asequence dna-align/BSNT_05677___rpoE.1.5803.seq
# -bsequence dna-align/BL05358___rpoE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05677___rpoE-BL05358___rpoE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05677___rpoE-BL05358___rpoE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05677___rpoE
# 2: BL05358___rpoE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity: 406/530 (76.6%)
# Similarity: 406/530 (76.6%)
# Gaps: 37/530 ( 7.0%)
# Score: 1561.0
#
#
#=======================================
BSNT_05677___ 1 TTGGGTATCAAACAATATTCACAGGAAGAGCTAAAGGAAATGGCTTTAGT 50
.||.||.|.||||||||.|||.|||||.||||||||||||||||||||||
BL05358___rpo 1 ATGAGTTTGAAACAATACTCAGAGGAACAGCTAAAGGAAATGGCTTTAGT 50
BSNT_05677___ 51 TGAAATCGCTCACGAATTATTT----GAAGAACATAAAAAACCAGTTCCT 96
|||||||||..||||| |||| | |||||.||||||||..||.|.
BL05358___rpo 51 TGAAATCGCATACGAA--ATTTTCTCG--GAACACAAAAAACCGATTACA 96
BSNT_05677___ 97 TTTCAGGAGCTTTTAAATGAAATCGCATCTTTGCTCGGCGTGAAAAAAGA 146
||.||||||||...|.||.||.|.||.||.|||||.||..||...|||||
BL05358___rpo 97 TTCCAGGAGCTAACAGATCAAGTGGCTTCCTTGCTTGGAATGGGGAAAGA 146
BSNT_05677___ 147 AGAGCTTGGAGACCGCATCGCTCAATTTTATACAGATTTAAACATTGACG 196
||||||.|.||||||||||||.||.||.||.|||||||||||.||.||||
BL05358___rpo 147 AGAGCTGGAAGACCGCATCGCCCAGTTCTACACAGATTTAAATATCGACG 196
BSNT_05677___ 197 GCCGCTTCCTGGCGCTATCTGACCAGACGTGGGGGCTTCGCAGCTGGTAT 246
|.|||||..|||||||.||.|||||.||||||||.||.||||||||||||
BL05358___rpo 197 GACGCTTTTTGGCGCTGTCAGACCAAACGTGGGGCCTGCGCAGCTGGTAT 246
BSNT_05677___ 247 CCGTATGATCAGCTTGATGAAGAAACTCAGCCGACAGTCAAGGCGAAAAA 296
||||||||||||||||||||||||||.||||||||.||.||.||||||||
BL05358___rpo 247 CCGTATGATCAGCTTGATGAAGAAACCCAGCCGACTGTAAAAGCGAAAAA 296
BSNT_05677___ 297 GAAAAAAGCGAAGAAAGCAGTCGAAGAAGATCTTGATCTTGACGAGTTTG 346
||||||||||||.|||||.||.|||||||||||||||||||||||.||.|
BL05358___rpo 297 GAAAAAAGCGAAAAAAGCGGTTGAAGAAGATCTTGATCTTGACGAATTCG 346
BSNT_05677___ 347 AAGAGATCGACGAAGACGACCTTGATTTGGATGAAGTTGAGGAAGAACTC 396
||||.||||||||.||.||..||..|.|.||.||.||.||.|||||..|.
BL05358___rpo 347 AAGAAATCGACGAGGATGATATTCTTCTTGACGATGTCGAAGAAGATTTG 396
BSNT_05677___ 397 GATCTTGAAGCCGACGATTTTGACGATGAAGATCTTGACGAAGACGACGA 446
||..||||.|||||.||.|| ||||||| ||| ||.||||.||||||
BL05358___rpo 397 GACATTGACGCCGATGAATT---CGATGAA-ATC--GATGAAGCCGACGA 440
BSNT_05677___ 447 CGAT---CTTGA-GATC--GAAGAAGATAT------TGTTGATGAAGATG 484
.||| ||.|| |||| |||||.||.|| ||.||||||||||.
BL05358___rpo 441 TGATGAGCTGGATGATCTTGAAGACGAGATCCTGGATGATGATGAAGATT 490
BSNT_05677___ 485 ATGAAGAAGAGGAA-------ATTAAATAG 507
.|||.||||||||| |.|||
BL05358___rpo 491 TTGATGAAGAGGAAGACGAAGAGTAA---- 516
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