Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00506 and BL05310

See DNA alignment / Visit BSNT_00506 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:08
# Commandline: needle
#    -asequence pep-align/BSNT_00506___ycdH.1.5803.seq
#    -bsequence pep-align/BL05310___ycdH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00506___ycdH-BL05310___ycdH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00506___ycdH-BL05310___ycdH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00506___ycdH
# 2: BL05310___ycdH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 348
# Identity:     135/348 (38.8%)
# Similarity:   197/348 (56.6%)
# Gaps:          34/348 ( 9.8%)
# Score: 628.5
# 
#
#=======================================

BSNT_00506___      1 MFKKWSGLFVIAACFLLVA--ACGNSSTKGSADSKGDK--LHVVTTFYPM     46
                      .||   .|.||:.|:|.|  ..|.||...|::.|.:|  |.:.||.||:
BL05310___ycd      1 -MKK---TFGIASAFILAAGLTAGCSSNGASSEQKENKDTLDIYTTIYPL     46

BSNT_00506___     47 YEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADLFVYNSEYM     96
                     .:|||:|..:..:|..:.|.:||.|.:||:.|.:|.|.|:|.|:|:...:
BL05310___ycd     47 EDFTKKIGGEYVNVKSVYPPNVEAHTYEPSSKTMAEISDSDAFIYSGVGV     96

BSNT_00506___     97 ETWVPSAEKSMGQGHAVFVNASKGIDLM----EGSEEEH-----------    131
                     |.:...|..::.......|.|.:||||:    ||..:||           
BL05310___ycd     97 EGFADKAVSTLKNSDVKIVKAGEGIDLLSREEEGEHDEHAHGEEHGEHDE    146

BSNT_00506___    132 ----EEHDHGE-----HEHSHA-MDPHVWLSPVLAQKEVKNITAQIVKQD    171
                         |||:|||     |.|.|. .|||.||.||||:|..:||..|:||.:
BL05310___ycd    147 HAHEEEHEHGEAEGHDHHHDHGDHDPHAWLDPVLAEKMAENIKDQLVKLE    196

BSNT_00506___    172 PDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYLAKE    221
                     |::::.:.||.:.....|:.|||.::.|..||:|||.:..|.|:||..|.
BL05310___ycd    197 PEHEKTFTKNYESLKKDLEQLDKDFKQTVDKADKKEILVSHAAYGYWEKR    246

BSNT_00506___    222 YGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADT    271
                     ||:||:.:.||||.:|||...|..:...|||||:|.|.||...|||:::.
BL05310___ycd    247 YGIKQISVLGLSPTEEPSQKQLENIVKTAKEHNIKYIIFESNVSSKISEI    296

BSNT_00506___    272 LASEIGAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKDSLLVKS    319
                     :..||||::..:..||.::||:.:.|..|..|||:|||.||.:|..| 
BL05310___ycd    297 IKKEIGAESLTMKNLESVTKEDIESGKDYTAIMKENLDVLKKALSSK-    343


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