Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00506 and BL05310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_00506___ycdH.1.5803.seq
# -bsequence dna-align/BL05310___ycdH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00506___ycdH-BL05310___ycdH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00506___ycdH-BL05310___ycdH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00506___ycdH
# 2: BL05310___ycdH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1184
# Identity: 611/1184 (51.6%)
# Similarity: 611/1184 (51.6%)
# Gaps: 376/1184 (31.8%)
# Score: 1309.5
#
#
#=======================================
BSNT_00506___ 1 ATGTTTAAAAAAT--GGAGCGGTTTGTTTGTGATTGCAGCGTGCTTT--T 46
|||...||||.|| ||| ||.|||.| |||.|| |
BL05310___ycd 1 ATGAAAAAAACATTCGGA--------------ATAGCATC-TGCATTCAT 35
BSNT_00506___ 47 TATTAGTTGCAGCAT-----GC-GGTAACTCA-----------------T 73
|.|| |.|||.|.|| || |||..|||| |
BL05310___ycd 36 TCTT-GCTGCCGGATTAACAGCGGGTTGCTCAAGCAATGGAGCTTCCAGT 84
BSNT_00506___ 74 CAACAAAAGGGTCGGCGGATTCAAAGGGTGATAAACTG-CACGTTG---- 118
.|||||||.| ||| ||||| | ||||.||
BL05310___ycd 85 GAACAAAAAG------------AAA-----ATAAA--GACACGCTGGACA 115
BSNT_00506___ 119 TC---ACAACGTTCTACCCGATGTATGAATTCACAAAACAAAT------- 158
|| |||||..|.||.|||.|..|.||.|||||.|||.|.||
BL05310___ycd 116 TCTATACAACCATTTATCCGCTTGAAGACTTCACCAAAAAGATCGGCGGA 165
BSNT_00506___ 159 -----TGTAAAAGACAAAGGCGATGTGGATCTGTTAATCCCATCTTCCGT 203
|||.||.|..|||.| ||||.| |||..|...|||
BL05310___ycd 166 GAATATGTGAACGTTAAAAG-----------TGTTTA-CCCGCCAAACGT 203
BSNT_00506___ 204 TGAACCGCATGATTGGGAACCGACGCCGAAAGAC-ATTGCTAACAT---- 248
||||.||||...||..||.|| |.||..|||.|| ||.||..|.||
BL05310___ycd 204 TGAAGCGCACACTTACGAGCC-AAGCTCAAAAACGATGGCGGAAATTTCC 252
BSNT_00506___ 249 ---TCAGGATGCTGATTTGTTCGTTTATAATAGTGAATAC-ATGGAGAC- 293
|| ||||| |.||||| |||| .|||||.|
BL05310___ycd 253 GACTC-GGATG----------CCTTTAT--------ATACTCTGGAGTCG 283
BSNT_00506___ 294 ------ATGGGTTC-----------------------------------C 302
|.||.||| |
BL05310___ycd 284 GTGTTGAAGGATTCGCAGACAAAGCTGTAAGCACACTTAAAAACAGCGAC 333
BSNT_00506___ 303 GTCAGCTGAAA-----AAAGCATGGGCCAAGGCCA-TGCCGTTTT----C 342
|||| ||| |||||..||| |||.|| ||.|.||.| |
BL05310___ycd 334 GTCA----AAATCGTCAAAGCCGGGG---AGGGCATTGACCTTCTGTCAC 376
BSNT_00506___ 343 GTTAATGCAAGCAAAGG------TATTGATTTAATGGAAGGCTC-TGAAG 385
||.|| .||| |||| |..||| |.|.||.| ||.||
BL05310___ycd 377 GTGAA--GAAG--AAGGCGAACATGATGA-------GCATGCACATGGAG 415
BSNT_00506___ 386 AAGAA---------CACGAAGAGCATG---ATCATGGGGAGCATGAGCAC 423
||||| |||||.||||||| ||.|.|..||.|||||.|||
BL05310___ycd 416 AAGAACACGGTGAGCACGATGAGCATGCACATGAAGAAGAACATGAACAC 465
BSNT_00506___ 424 AG---------------------TCATGCA-----ATG--------GATC 439
.| |||| || ||| ||.|
BL05310___ycd 466 GGAGAAGCCGAAGGTCACGATCATCAT-CACGACCATGGAGATCATGACC 514
BSNT_00506___ 440 CTCACGTATGGCTCAGCCCTGTTCTGGC---ACAGAAGGAAGTTAAAAAT 486
|.||||.||||||....|||||.||.|| |.|.|.||..| ||||.
BL05310___ycd 515 CGCACGCATGGCTTGATCCTGTCCTTGCTGAAAAAATGGCCG---AAAAC 561
BSNT_00506___ 487 ATTACGGCTCAAATCGT-------GAAGCAGGACCCGGATAACAAA---- 525
||||..|..|||.|||| |||.|.|.||.|| ||.|||
BL05310___ycd 562 ATTAAAGACCAACTCGTAAAATTAGAACCTGAACACG---AAAAAACGTT 608
BSNT_00506___ 526 ----GAATACTATGAG-----AAAAATAGTAAAGAATATATTGCAAAACT 566
.||.|||||||| |||| |||||.| |
BL05310___ycd 609 TACGAAAAACTATGAGTCATTAAAA-----AAAGACT------------T 641
BSNT_00506___ 567 GCAGGATCTTGATAA--ACTATATCGTAC-AACCGCAAAAAAAGCGGAGA 613
|.||.|.|||||.|| ||| ||..|| |||.|...|.|||||.||.|
BL05310___ycd 642 GGAGCAGCTTGACAAAGACT---TCAAACAAACAGTCGACAAAGCTGATA 688
BSNT_00506___ 614 AAAAAGAATTTATC-ACGCAGCATACAGCTTTTGGCTATCTGGCAAAAGA 662
||||||||.||.|| .|.|| |||.|.||.|..||||| ||||.||| |
BL05310___ycd 689 AAAAAGAAATTCTCGTCTCA-CATGCCGCCTACGGCTA-CTGGGAAA--A 734
BSNT_00506___ 663 A---TACGGCTTGAAGCAG------GTTC-CGATTGCAGGGCTGTCACCT 702
| ||||||.|.|||||| |||| | ||.||.||.|||
BL05310___ycd 735 ACGCTACGGCATTAAGCAGATAAGCGTTCTC-------GGCCTTTCGCCT 777
BSNT_00506___ 703 GAC-CAAGAACC-------GAGCGCAGCCAGCTTGGCAAAGC----TGAA 740
|| .|.||||| .|| ||||||| |||.| |.||
BL05310___ycd 778 -ACTGAGGAACCTTCACAAAAG------CAGCTTG--AAAACATTGTTAA 818
BSNT_00506___ 741 AACATATGCCAAAGAACATAATGTAAAAGTTAT--TTACTTTG-AAGAAA 787
|||| ||.||||||||||||.|.|||..||| || |||| |||.||
BL05310___ycd 819 AACA---GCGAAAGAACATAATATTAAATATATCATT--TTTGAAAGCAA 863
BSNT_00506___ 788 TTGCATCCTCAAAGGTCGCAGATACGCTCGCCAGTGAAATCGGCGCG--A 835
|..||.|..|||| .||.|.||.|...||...|..||||||||.||| |
BL05310___ycd 864 TGTCAGCAGCAAA-ATCTCCGAGATCATCAAAAAAGAAATCGGAGCGGAA 912
BSNT_00506___ 836 AGACAGAAGTGCTGAATACACTGGAAGGCT-TGAGCAAAGAAGA-----A 879
||.|.|| .|.||||.|..||.||| .|| |.|..|||||||| |
BL05310___ycd 913 AGTCTGA--CGATGAAAAACCTTGAA-TCTGTAACAAAAGAAGACATTGA 959
BSNT_00506___ 880 CAG-GATAAAGGTTTAGGGTATATCGACATTATGAAACAAAACCTCGATG 928
.|| |..||||.| ||||.||.|||.||||||.|||||||.||.|
BL05310___ycd 960 AAGCGGCAAAGAT------TATACCGCCATCATGAAAGAAAACCTGGACG 1003
BSNT_00506___ 929 CCCTGAAAGATTCACTATTGGTTAAATC--ATAA 960
.|.|||||.|..|..|| |.||.| ||||
BL05310___ycd 1004 TCTTGAAAAAAGCTTTA-----TCAAGCAAATAA 1032
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