Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02903 and BL03942
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence pep-align/BSNT_02903___xylR.1.5803.seq
# -bsequence pep-align/BL03942___xylR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02903___xylR-BL03942___xylR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02903___xylR-BL03942___xylR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02903___xylR
# 2: BL03942___xylR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 387
# Identity: 188/387 (48.6%)
# Similarity: 279/387 (72.1%)
# Gaps: 3/387 ( 0.8%)
# Score: 1030.0
#
#
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BSNT_02903___ 1 MDIADQTFVKKVNQKLLLKEILKNSPISRAKLSEMTGLNKSTVSSQVNTL 50
|:.|||..|||:|:.|:.::|::|.|:|||||||:|||||:||||||::|
BL03942___xyl 1 MNTADQALVKKMNKALIFEQIIENGPVSRAKLSEITGLNKATVSSQVSSL 50
BSNT_02903___ 51 MKENLVFEIGQGKSSGGRRPVMLVFNKKAGYSVGIDVGVDYINGILTDLE 100
:::::::|.|.|:||||||||||.||:||||:||:|||.:||...|||||
BL03942___xyl 51 LQKDIIYETGPGESSGGRRPVMLKFNRKAGYAVGVDVGTNYIIVALTDLE 100
BSNT_02903___ 101 GTIVLDQYCHLESNSPEITKDILIDMIHHFITHMPQSPYGLIGIGICVPG 150
|.::......|:....:.|::.||::....:..:|.||:||.|||:||||
BL03942___xyl 101 GHLIEQFERTLDEEDIQATEEALIELTGLAVDKIPPSPFGLTGIGVCVPG 150
BSNT_02903___ 151 LIDKDQKIVFTPNSNWRDIDLKSSIQEKYNVPVFIENEANAGAYGEKVFG 200
|:|.::.:|||||.....|.:|..::|::.||:.|||||||||.|||.:|
BL03942___xyl 151 LVDNERHVVFTPNKPIHLIPIKEKLEERFGVPILIENEANAGAVGEKEYG 200
BSNT_02903___ 201 AAKNHDNIIYVSISTGIGIGVIINNHLYRGVSGFSGEMGHMTIDFNGPKC 250
.....::.::|||:||||:|:::|..|:|||.|||||.|||:|.|:||.|
BL03942___xyl 201 EGGQLEHAVFVSINTGIGLGILMNGKLFRGVQGFSGEAGHMSIHFDGPLC 250
BSNT_02903___ 251 SCGNRGCWELYASEKALLTSLQTKAKKLSYQDIIDLAHLNDIGTLNALQN 300
.|||||||||||||||:.:.....:....|:.:.:||...|.|.:...:.
BL03942___xyl 251 RCGNRGCWELYASEKAVFSHYAANSGAQLYETVKELADRGDPGMMETFER 300
BSNT_02903___ 301 FGFYLGIGLTNILNTFNPQAVILRNSIIESHPMVLNSMRSEVSSRVYSQL 350
|||::||||.|||.|.||..:||||:|:||:|.::::::..::||..::.
BL03942___xyl 301 FGFHIGIGLLNILKTLNPDTIILRNTIVESYPSIVDAIKKTIASRSAAEA 350
BSNT_02903___ 351 GNSYELLPSSLGQNAPALGMSSIVIDHFLDMITM--- 384
.::|.|..|:||:.|.||||||:|.:.||:....
BL03942___xyl 351 LSNYHLKISTLGRTASALGMSSLVTERFLERFMNERF 387
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