Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02903 and BL03942
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_02903___xylR.1.5803.seq
# -bsequence dna-align/BL03942___xylR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02903___xylR-BL03942___xylR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02903___xylR-BL03942___xylR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02903___xylR
# 2: BL03942___xylR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1340
# Identity: 718/1340 (53.6%)
# Similarity: 718/1340 (53.6%)
# Gaps: 361/1340 (26.9%)
# Score: 1748.0
#
#
#=======================================
BSNT_02903___ 1 GTGGATATCGCTGATCAAACCTTTGTCAAAAAAGTAAATCAAAAG---TT 47
.||.|||..||.||||||.||.||||.||||||.|.|| .|||| |.
BL03942___xyl 1 TTGAATACAGCGGATCAAGCCCTTGTAAAAAAAATGAA--CAAAGCCCTG 48
BSNT_02903___ 48 ATTATTAAAAG-AAATCCTTAAAAATTCACCTATTTCAAGAGCAAAATTA 96
|||.|| .|| |.||..||.||||...|||..|.|||||.||.|||.|.
BL03942___xyl 49 ATTTTT--GAGCAGATTATTGAAAACGGACCCGTCTCAAGGGCCAAACTT 96
BSNT_02903___ 97 TCTGAAATGACTGGATTAAATAAATCAACTGTTTCATCACAGGTAAACAC 146
||.|||||.||.||||||||||||.|.||.|||||.||.||.||
BL03942___xyl 97 TCGGAAATAACAGGATTAAATAAAGCGACCGTTTCCTCCCAAGT------ 140
BSNT_02903___ 147 G----------TTAATGAAAGAAAATCTGGTATT--TGAAATAGGTCAAG 184
| ||.| ||||.|.||| ||| |||||..||.|..|
BL03942___xyl 141 GTCTTCCCTGCTTCA--AAAGGACATC----ATTTATGAAACCGGCCCCG 184
BSNT_02903___ 185 GAAAATCAAGTGGCGGAAGAAGACCTGTCATGCTTGTTTTTAATAAAAAG 234
|..|.|||||.|||||.|||||.||.||.|||||....||.|||..|||.
BL03942___xyl 185 GCGAGTCAAGCGGCGGCAGAAGGCCCGTTATGCTGAAATTCAATCGAAAA 234
BSNT_02903___ 235 GCAGGATACTCCGTAGGAATAGATGTTGGTGTGGATTATATCAATGGCAT 284
||.||.||..|.||.||..|||||||.||.....|||||||.|.|| |
BL03942___xyl 235 GCCGGCTATGCGGTCGGTGTAGATGTCGGAACCAATTATATAATTG---T 281
BSNT_02903___ 285 T---TTAACAGACCTTGAAGGAACGATCGTTCTTGATCAATACTGCCATT 331
| |||||.|||||||||| |.||||
BL03942___xyl 282 TGCGTTAACCGACCTTGAAG------------------------GGCATT 307
BSNT_02903___ 332 TG---GAATCCAATTCTCCAGAAATAACG---------AAAGACATT--- 366
|| ||| |||||| |||..|||| .||||||||
BL03942___xyl 308 TGATTGAA--CAATTC----GAACGAACGCTTGATGAAGAAGACATTCAG 351
BSNT_02903___ 367 ---------------TTGATTGATATGA------------TTCATCACTT 389
||.||.||..||| ||.| ||
BL03942___xyl 352 GCGACAGAAGAGGCATTAATCGAATTGACGGGGCTTGCCGTTGA-CA--- 397
BSNT_02903___ 390 TATTACGCATATGCCCCAATCTCCGTACGGGCTTATT----GGTATAGGT 435
|.||.||.|..||.||.|.||| ||| ||.||.||.
BL03942___xyl 398 --------AAATACCGCCTTCCCCATTCGG----ATTGACCGGAATCGGC 435
BSNT_02903___ 436 ATTTGCGTGCCTGGACTCATTGATAAAGATCAAAAAATTGTTTTCACTCC 485
.|.||||||||.||..|..|.||.||.||.|...|..|.||.||.||.||
BL03942___xyl 436 GTGTGCGTGCCCGGCTTGGTGGACAACGAACGGCATGTAGTCTTTACGCC 485
BSNT_02903___ 486 GAA-------CTCCAACTGGAGAGATATTGACTTAAAATCTT-CGATACA 527
.|| .|||| .|||| || |||||.|
BL03942___xyl 486 AAATAAGCCGATCCA-----------TTTGA---------TTCCGATAAA 515
BSNT_02903___ 528 AGAGAA------------GTACAATGTGCCTGTTTTTATTGAAAATGAGG 565
|||.|| ||.|...||.||..||||.||||||||.||.|
BL03942___xyl 516 AGAAAAACTGGAAGAAAGGTTCGGCGTTCCCATTTTAATTGAAAACGAAG 565
BSNT_02903___ 566 CAAATGCTGGCGCATATGGAGAGAAAGTATTTGG-----------AGCT- 603
|.||.||.|||||...|||.|||||.|.||..|| ||||
BL03942___xyl 566 CCAACGCCGGCGCCGTTGGCGAGAAGGAATACGGGGAAGGCGGCCAGCTT 615
BSNT_02903___ 604 --GCAAAAAATCACGATAACATTATTTACGTAAGTATCAGCACAGGGATA 651
|| ||..|| |.||| ||.||.||.| |||
BL03942___xyl 616 GAGC-----ATGCCG-------TGTTT--GTCAGCATTA--------ATA 643
BSNT_02903___ 652 --GGGATCGGTGTT----ATTATCAACAAT---CATTTATATAGAGGAGT 692
||||||||| || |||.|.|..||| .|.||.|.||||||.||
BL03942___xyl 644 CCGGGATCGGT-TTAGGGATTTTAATGAATGGAAAATTGTTTAGAGGTGT 692
BSNT_02903___ 693 AAGC--GGCTTCTCTGGAGAAATGGGACATATGACAATAGACTTTAATGG 740
|| ||.||.||.||||||...||.||.|||.|.||..|||||.|.||
BL03942___xyl 693 --GCAAGGTTTTTCCGGAGAAGCCGGGCACATGTCCATTCACTTTGACGG 740
BSNT_02903___ 741 TCCTAAATGCAGTTGCGGAAACCGAGGCTGCTGGGAATTGTATGCTTCAG 790
|||...||||.|.||||||||..|||||||||||||..|.||.|||||||
BL03942___xyl 741 TCCGTTATGCCGGTGCGGAAATAGAGGCTGCTGGGAGCTTTACGCTTCAG 790
BSNT_02903___ 791 AGAAGGCTTTATTAACATCTCTTCAGACTA--AAGCGAA----------- 827
|.||.|| |.|||..||..|||| .||||||
BL03942___xyl 791 AAAAAGC--------CGTCTTCTCTCACTATGCAGCGAATTCCGGGGCCC 832
BSNT_02903___ 828 --------AAAACTGTCCTATCAAGATATCATAGACCTCGCCCATC--TG 867
.||||.|| |.||||..|...|||||.||...||| .|
BL03942___xyl 833 AGCTTTACGAAACCGT----TAAAGAACTTGCAGACCGCGGTGATCCGGG 878
BSNT_02903___ 868 AATGATATCGGAACC--TTAAACGCATTACAGAATTTTGGATTCTATTTA 915
.||||| |||..| ||.||||| |||||.||..||.|.
BL03942___xyl 879 CATGAT---GGAGACGTTTGAACGC----------TTTGGCTTTCATATC 915
BSNT_02903___ 916 GGAATAGGCCTTACCAATATTTTGAATACTTTCAA--CCCACAGGCCGTA 963
||.||.||.|||..|||.||.|||||.||.||.|| ||.||| ||.|.
BL03942___xyl 916 GGCATCGGGCTTCTCAACATCTTGAAAACGTTGAATCCCGACA--CCATT 963
BSNT_02903___ 964 ATTTTAAGAAATAGCATAATTGAATCGCATCC---TATGGTTTTAAATTC 1010
||.||..|.||||.||||.|.|||||..|||| .||.| ||
BL03942___xyl 964 ATCTTGCGGAATACCATAGTGGAATCCTATCCGAGCATCG--------TC 1005
BSNT_02903___ 1011 AATGAGAAGTGAAGTGTCGTCAA------GGGTTTATT--CCCAATTAG- 1051
.|||.|| |||| | ||| |.|||..||
BL03942___xyl 1006 GATGCGA------------TCAAAAAAACG-----ATTGCCTCAAGAAGC 1038
BSNT_02903___ 1052 ---GCAATAGCTATG---AATTATTGCCATCTTCCTTAGGACAGAAT--- 1092
|||..|||..|| |||||| ||| ||| |.|||
BL03942___xyl 1039 GCAGCAGAAGCCTTGTCTAATTAT---CAT-----TTA----AAAATCTC 1076
BSNT_02903___ 1093 -----------GCACCG-----GCATTAGGAATGTCCTCCATTGTGATTG 1126
|||||| ||..|.||.|||||||||.||||.|..|
BL03942___xyl 1077 CACGCTCGGCCGCACCGCCTCAGCGCTTGGGATGTCCTCCCTTGTAACCG 1126
BSNT_02903___ 1127 ATCATTTTCTGGA------CATGATTAC-----AATGTAA 1155
|.|.||||||||| .|||| || |.|.|||
BL03942___xyl 1127 AACGTTTTCTGGAACGGTTTATGA--ACGAGAGATTTTAA 1164
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