Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05883 and BL03935
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:57
# Commandline: needle
# -asequence pep-align/BSNT_05883___ywaD.1.5803.seq
# -bsequence pep-align/BL03935___ywaD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05883___ywaD-BL03935___ywaD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05883___ywaD-BL03935___ywaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05883___ywaD
# 2: BL03935___ywaD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 460
# Identity: 269/460 (58.5%)
# Similarity: 330/460 (71.7%)
# Gaps: 16/460 ( 3.5%)
# Score: 1371.5
#
#
#=======================================
BSNT_05883___ 1 MKKLLTVMTMAV-LTAGTLLLP----AQSVTPAAHAVQISNSERELPFKA 45
||:.:.:..:|: :.||.::.. |....|...|:.....:....|..
BL03935___ywa 1 MKRKMMMFGLALSIIAGGVVADGTGNAAQAAPQETAIAKDIEKFSKKFNE 50
BSNT_05883___ 46 KHAYSTISQLSEAIGPRIAGTAAEKKSALLIASSMRKLKLDVKVQRFDIP 95
..||.||..|||.||||:.|||.|||||..|||.|:|..|.|..|:|.||
BL03935___ywa 51 NRAYQTIYHLSETIGPRVTGTAEEKKSAAFIASQMKKSNLKVSTQKFSIP 100
BSNT_05883___ 96 DRLEGTLSSAGRDILLQAASGSAPTEEQGLTAPLYNAGLGYQKDFTADAK 145
|||||||:..|.::..:.|:|||||..:||.||||:||||...|||.:||
BL03935___ywa 101 DRLEGTLTVQGNNVPARPAAGSAPTAAEGLAAPLYDAGLGLPGDFTEEAK 150
BSNT_05883___ 146 GKIALISRGDLTYYEKAKNAEAAGAKAVIIYNNKESLVPMTPNLSGNKVG 195
||||:|.||:||:|||||||..|||..||||||.:||||:|||||||||.
BL03935___ywa 151 GKIAVILRGELTFYEKAKNAADAGASGVIIYNNVDSLVPLTPNLSGNKVD 200
BSNT_05883___ 196 IPVVGIKKEDGEALTQQKEATLKLKAFTNQTSQNIIGIKKPKNIKHPDIV 245
|||||:||||||.|..::||.|||||..||||||:||::|.|.:|:||||
BL03935___ywa 201 IPVVGVKKEDGEKLLSEQEAILKLKAHKNQTSQNVIGVRKAKGVKNPDIV 250
BSNT_05883___ 246 YVTAHYDSVPFSPGANDNGSGTSVMLEMARVLKSVPSDKEIRFIAFGAEE 295
|||:||||||::||||||.|||||:||:||:||:||:|||||||.|||||
BL03935___ywa 251 YVTSHYDSVPYAPGANDNASGTSVVLELARILKTVPADKEIRFITFGAEE 300
BSNT_05883___ 296 LGLLGSSHYVDHLSEKELKRSEVNFNLDMVGTSWEKASELYVNTLDGQSN 345
:|||||.|||..||.:|:|||..|||||||.||||.||:||:||.||.:|
BL03935___ywa 301 IGLLGSRHYVSTLSNQEVKRSVANFNLDMVATSWENASQLYINTPDGSAN 350
BSNT_05883___ 346 YVWESSHTAAEKIGFDSLSLTQGGSSDHVPFHEAGIDSANFIWGDPETEE 395
.||:.|..|:..:|.|.|.|.||||||||||||||||||||||.:|.|..
BL03935___ywa 351 LVWQLSKAASLSLGKDVLFLHQGGSSDHVPFHEAGIDSANFIWREPGTGA 400
BSNT_05883___ 396 VEPWYHTPEDSIEHISKERLQQAGDLVTAAVYEAVKREKKPKTIKKQMKA 445
:|||||||.|:||||||:||:.||.:...|||...|:|.:..:.....:
BL03935___ywa 401 LEPWYHTPYDTIEHISKDRLKTAGQIAGTAVYNFTKKENRKPSYSSVAQ- 449
BSNT_05883___ 446 KATDIFEDIK 455
BL03935___ywa 449 ---------- 449
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