Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05883 and BL03935
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:57
# Commandline: needle
# -asequence dna-align/BSNT_05883___ywaD.1.5803.seq
# -bsequence dna-align/BL03935___ywaD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05883___ywaD-BL03935___ywaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05883___ywaD-BL03935___ywaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05883___ywaD
# 2: BL03935___ywaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1501
# Identity: 918/1501 (61.2%)
# Similarity: 918/1501 (61.2%)
# Gaps: 284/1501 (18.9%)
# Score: 2625.0
#
#
#=======================================
BSNT_05883___ 1 ATGAA---AAAGCTTTTGACTGTAATGACGATG-----------GCTGT- 35
||||| ||| |||||.|||| |||.|
BL03935___ywa 1 ATGAAGAGAAA------------AATGATGATGTTCGGATTGGCGCTATC 38
BSNT_05883___ 36 TTTAACTGCCGGCACACTGCTCTTGCC---GGCAC--AGAGTG----TCA 76
..|.|.|||.|||....||.|| ||| ||.|| .||.|| |||
BL03935___ywa 39 GATCATTGCAGGCGGCGTGGTC--GCCGATGGAACGGGGAATGCAGCTCA 86
BSNT_05883___ 77 -----CCCCT---------GC---CGCACACGCTGT--ACAAATATC--- 104
||||| || ||||.|.|.|.| |.|||| ||
BL03935___ywa 87 AGCGGCCCCTCAGGAAACAGCCATCGCAAAAGATATCGAAAAAT-TCAGC 135
BSNT_05883___ 105 ---AAAT--AGCGAG---CGCGAGCTTCCATTCAAAGCAAAGCATGCGTA 146
|||| |.|||| |||| ||..|||||..|
BL03935___ywa 136 AAAAAATTCAACGAGAACCGCG-----CCTATCAAACGA----------- 169
BSNT_05883___ 147 CTCTACCATTTCTCAGCTAAGTGAAGCAATCGGCCCCAGAATAGCCGGAA 196
|.||||||| ||||.|||.|.|||||.||..|..|..|.||.|
BL03935___ywa 170 -TTTACCATT-------TAAGCGAAACGATCGGGCCGCGTGTGACAGGCA 211
BSNT_05883___ 197 CTGCAGCTGAAAAAAAGAGTGCC-CTATTGATCGCCTCATCA-ATGAGAA 244
|.||||..|||||||||||.||| || ||.||||||||| || ||||.||
BL03935___ywa 212 CGGCAGAAGAAAAAAAGAGCGCCGCT-TTTATCGCCTCA-CAGATGAAAA 259
BSNT_05883___ 245 AATTAAAGCTTGATGTGAAGGTTCA-ACGA---TTCGACATTCCTGACCG 290
|.|.|||.||..|.|| ||| || ||.| |||..|||.||||||||
BL03935___ywa 260 AGTCAAATCTGAAAGT-AAG---CACACAAAAGTTCAGCATACCTGACCG 305
BSNT_05883___ 291 GCTTGAGGGAACACTGTC--TTCAGCAGGACGCGATA---TTCTTCTCCA 335
|||.||.|||||.||..| ||||| ||| .||| |.| ||.|
BL03935___ywa 306 GCTGGAAGGAACGCTTACCGTTCAG--GGA---AATAACGTGC--CTGC- 347
BSNT_05883___ 336 AGCGGCGT----CCGGCTCAGCTCCGACTGAGGAACAAGGGCTGACGGCC 381
|||||.| ||||.||.||.|||||||..|.|.||||..||.|.||.
BL03935___ywa 348 -GCGGCCTGCCGCCGGTTCCGCCCCGACTGCAGCAGAAGGCTTGGCCGCT 396
BSNT_05883___ 382 CCGCTTTACAATGCGGGATTGGGCTATCAAAAGGACTTTACCGCTGACGC 431
||.||.||..||||.||..|.||||..|.....|||||.||.|..||.||
BL03935___ywa 397 CCTCTCTATGATGCCGGCCTCGGCTTGCCCGGCGACTTCACAGAAGAAGC 446
BSNT_05883___ 432 CAAGGGCAAAATCGCTTTAATTTCCAGAGGAGACCTGACTTATTACGAGA 481
.||.||.||||||||..|.||||..||||||||.|||||.|..||.||.|
BL03935___ywa 447 GAAAGGAAAAATCGCCGTCATTTTGAGAGGAGAGCTGACATTCTATGAAA 496
BSNT_05883___ 482 AAGCCAAAAATGCCGAAGCCGCCGGAGCAAAAGCTGTCATCATTTATAAC 531
|.||||||||.||.|..|.|||.||.||||..|..||.|||||||||||.
BL03935___ywa 497 AGGCCAAAAACGCTGCTGACGCAGGCGCAAGCGGAGTTATCATTTATAAT 546
BSNT_05883___ 532 AACAAAGAAAGCCTCGTGCCTATGACGCCAAACCTGTCGGGAAATAAAGT 581
|||...||.||||||||.|||.||||.||.||.||....||.||||||||
BL03935___ywa 547 AACGTCGACAGCCTCGTCCCTCTGACTCCGAATCTAAGCGGTAATAAAGT 596
BSNT_05883___ 582 CGGCATTCCGGTCGTCGGCATTAAGAAAGAAGACGGCGAAGCACTTACCC 631
||..|||||.||.||||||.|.||.||.||||||||.||| |..|
BL03935___ywa 597 CGATATTCCAGTTGTCGGCGTCAAAAAGGAAGACGGGGAA------AAGC 640
BSNT_05883___ 632 AGC------AAAAAGAAGCCACCTTAAAACTAAAAGCATTC--ACAAACC 673
.|| ||.|||||||.|.|.|.||.||.||||| || |.|||.|
BL03935___ywa 641 TGCTTTCTGAACAAGAAGCGATCCTGAAGCTGAAAGC--TCATAAAAATC 688
BSNT_05883___ 674 AAACCTCTCAGAACATCATCGGAATTAAAAAACCAAAGAACA----TCAA 719
|||||||.||.|||.|.|||||..|....|||.|||| | ||||
BL03935___ywa 689 AAACCTCGCAAAACGTAATCGGCGTCCGCAAAGCAAA----AGGTGTCAA 734
BSNT_05883___ 720 ACATCCAGACATTGTGTACGTGACGGCCCATTACGACAGTGTTCCTTTTT 769
|.||||.|||||.||.||.|||||..|.|||||.|||||.|||||.|.|.
BL03935___ywa 735 AAATCCTGACATCGTTTATGTGACTTCGCATTATGACAGCGTTCCATATG 784
BSNT_05883___ 770 CACCCGGAGCAAATGACAACGGCTCAGGAACCTCTGTTATGCTGGAGATG 819
||||.|||||.||||||||.|.|||.||.||.||.||..|.||.||..||
BL03935___ywa 785 CACCGGGAGCCAATGACAATGCCTCCGGCACTTCAGTCGTCCTTGAACTG 834
BSNT_05883___ 820 GCGCGTGTCTTAAAAAGCGTTCCATCTGATAAAGAAATCCGCTTTATCGC 869
||.||..|.||.||.|..||.|||.|.||.||||||||.||||||||..|
BL03935___ywa 835 GCCCGAATTTTGAAGACAGTGCCAGCCGACAAAGAAATTCGCTTTATTAC 884
BSNT_05883___ 870 TTTCGGCGCCGAAGAGCTCGGCCTGCTCGGCTC-CTCTCACTATGT-AGA 917
.|||||.||||||||..||||.||.|||||.|| |.| ||.||||| ||.
BL03935___ywa 885 ATTCGGAGCCGAAGAAATCGGACTCCTCGGTTCGCGC-CATTATGTCAGC 933
BSNT_05883___ 918 TCATCTATCGGAAA--AAGAGCTGAAACGAAGCGAAGTGAACTTCAACTT 965
.||| |.|| ||| |.||..|.|||||.||||..|..|||||.|||||
BL03935___ywa 934 ACAT-TGTC--AAATCAGGAAGTCAAACGGAGCGTTGCCAACTTTAACTT 980
BSNT_05883___ 966 AGATATGGTAGGC-ACAAGCTGGGAAAAAGCGTCTGAGCTGTATGTCAAC 1014
||||||||| ||| |||||||||||.||.||.||..|||||||..||||.
BL03935___ywa 981 AGATATGGT-GGCGACAAGCTGGGAGAATGCTTCACAGCTGTACATCAAT 1029
BSNT_05883___ 1015 AC-----ATTGGACGGCCAATCTAACTATGTTTGGGAATCCAGCCA--TA 1057
|| |..|..||||.||.|| .||.||| ||||.| ||
BL03935___ywa 1030 ACGCCCGACGGTTCGGCAAACCT-----CGTCTGG-----CAGCTAAGTA 1069
BSNT_05883___ 1058 CAGCTGCT-------------GAAAA----AATTGGGTTTGACAGCCTGT 1090
.|||.||| ||||| .|||...|||
BL03935___ywa 1070 AAGCCGCTTCTTTAAGCCTTGGAAAAGACGTATTATTTTT---------- 1109
BSNT_05883___ 1091 CTCTGACA-CAGGGAGGATCATCTGATCATGTGCCATTCCACGAAGCCGG 1139
||| ||.||.||||||||.||.|||||.||||||||.||||||||
BL03935___ywa 1110 -----ACATCAAGGCGGATCATCCGACCATGTCCCATTCCATGAAGCCGG 1154
BSNT_05883___ 1140 CATTGATTCCGCCAACTTTATTTGGGGAGACCCGGAAACAGAAGAAGTTG 1189
|||.||.||.|||||||||||||||.||||.||||.|||||..|...|.|
BL03935___ywa 1155 CATCGACTCGGCCAACTTTATTTGGAGAGAGCCGGGAACAGGCGCTTTGG 1204
BSNT_05883___ 1190 AGCCGTGGTATCATACCCCCGAAGACTCGATCGAACATATCAGCAAAGAA 1239
||||.|||||.||.|||||..|.|||.||||.|||||||||||||||||
BL03935___ywa 1205 AGCCTTGGTACCACACCCCTTACGACACGATTGAACATATCAGCAAAGA- 1253
BSNT_05883___ 1240 CGCCTCCAGCAAGCAGGCGATCTTGTG---ACAGCCGCAGTCTATGAG-- 1284
||||| || ||||||| |||.|...|
BL03935___ywa 1254 -------------CAGGC-------TGAAAACAGCCG--GTCAAATCGCG 1281
BSNT_05883___ 1285 ------GCTGTGAA----------AAGAGAGAAGAAACCA-AAAACCATT 1317
||||||.| |||| |.||||.|| ||||||.|
BL03935___ywa 1282 GGAACAGCTGTGTATAACTTCACCAAGA---AGGAAAACAGAAAACCGT- 1327
BSNT_05883___ 1318 AAGAAACAAATGAAGGCCAAAGCAACTGACATTTTTGAAGATATCAAATA 1367
||.|||..| .||.|..|.|.||
BL03935___ywa 1328 -------------------------CTTACAGCT---CAGTTGCCCAGTA 1349
BSNT_05883___ 1368 A 1368
|
BL03935___ywa 1350 A 1350
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