Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05883 and BL03935

See Amino acid alignment / Visit BSNT_05883 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence dna-align/BSNT_05883___ywaD.1.5803.seq
#    -bsequence dna-align/BL03935___ywaD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05883___ywaD-BL03935___ywaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05883___ywaD-BL03935___ywaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05883___ywaD
# 2: BL03935___ywaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1501
# Identity:     918/1501 (61.2%)
# Similarity:   918/1501 (61.2%)
# Gaps:         284/1501 (18.9%)
# Score: 2625.0
# 
#
#=======================================

BSNT_05883___      1 ATGAA---AAAGCTTTTGACTGTAATGACGATG-----------GCTGT-     35
                     |||||   |||            |||||.||||           |||.| 
BL03935___ywa      1 ATGAAGAGAAA------------AATGATGATGTTCGGATTGGCGCTATC     38

BSNT_05883___     36 TTTAACTGCCGGCACACTGCTCTTGCC---GGCAC--AGAGTG----TCA     76
                     ..|.|.|||.|||....||.||  |||   ||.||  .||.||    |||
BL03935___ywa     39 GATCATTGCAGGCGGCGTGGTC--GCCGATGGAACGGGGAATGCAGCTCA     86

BSNT_05883___     77 -----CCCCT---------GC---CGCACACGCTGT--ACAAATATC---    104
                          |||||         ||   ||||.|.|.|.|  |.|||| ||   
BL03935___ywa     87 AGCGGCCCCTCAGGAAACAGCCATCGCAAAAGATATCGAAAAAT-TCAGC    135

BSNT_05883___    105 ---AAAT--AGCGAG---CGCGAGCTTCCATTCAAAGCAAAGCATGCGTA    146
                        ||||  |.||||   ||||     ||..|||||..|           
BL03935___ywa    136 AAAAAATTCAACGAGAACCGCG-----CCTATCAAACGA-----------    169

BSNT_05883___    147 CTCTACCATTTCTCAGCTAAGTGAAGCAATCGGCCCCAGAATAGCCGGAA    196
                      |.|||||||       ||||.|||.|.|||||.||..|..|..|.||.|
BL03935___ywa    170 -TTTACCATT-------TAAGCGAAACGATCGGGCCGCGTGTGACAGGCA    211

BSNT_05883___    197 CTGCAGCTGAAAAAAAGAGTGCC-CTATTGATCGCCTCATCA-ATGAGAA    244
                     |.||||..|||||||||||.||| || ||.||||||||| || ||||.||
BL03935___ywa    212 CGGCAGAAGAAAAAAAGAGCGCCGCT-TTTATCGCCTCA-CAGATGAAAA    259

BSNT_05883___    245 AATTAAAGCTTGATGTGAAGGTTCA-ACGA---TTCGACATTCCTGACCG    290
                     |.|.|||.||..|.|| |||   || ||.|   |||..|||.||||||||
BL03935___ywa    260 AGTCAAATCTGAAAGT-AAG---CACACAAAAGTTCAGCATACCTGACCG    305

BSNT_05883___    291 GCTTGAGGGAACACTGTC--TTCAGCAGGACGCGATA---TTCTTCTCCA    335
                     |||.||.|||||.||..|  |||||  |||   .|||   |.|  ||.| 
BL03935___ywa    306 GCTGGAAGGAACGCTTACCGTTCAG--GGA---AATAACGTGC--CTGC-    347

BSNT_05883___    336 AGCGGCGT----CCGGCTCAGCTCCGACTGAGGAACAAGGGCTGACGGCC    381
                      |||||.|    ||||.||.||.|||||||..|.|.||||..||.|.||.
BL03935___ywa    348 -GCGGCCTGCCGCCGGTTCCGCCCCGACTGCAGCAGAAGGCTTGGCCGCT    396

BSNT_05883___    382 CCGCTTTACAATGCGGGATTGGGCTATCAAAAGGACTTTACCGCTGACGC    431
                     ||.||.||..||||.||..|.||||..|.....|||||.||.|..||.||
BL03935___ywa    397 CCTCTCTATGATGCCGGCCTCGGCTTGCCCGGCGACTTCACAGAAGAAGC    446

BSNT_05883___    432 CAAGGGCAAAATCGCTTTAATTTCCAGAGGAGACCTGACTTATTACGAGA    481
                     .||.||.||||||||..|.||||..||||||||.|||||.|..||.||.|
BL03935___ywa    447 GAAAGGAAAAATCGCCGTCATTTTGAGAGGAGAGCTGACATTCTATGAAA    496

BSNT_05883___    482 AAGCCAAAAATGCCGAAGCCGCCGGAGCAAAAGCTGTCATCATTTATAAC    531
                     |.||||||||.||.|..|.|||.||.||||..|..||.|||||||||||.
BL03935___ywa    497 AGGCCAAAAACGCTGCTGACGCAGGCGCAAGCGGAGTTATCATTTATAAT    546

BSNT_05883___    532 AACAAAGAAAGCCTCGTGCCTATGACGCCAAACCTGTCGGGAAATAAAGT    581
                     |||...||.||||||||.|||.||||.||.||.||....||.||||||||
BL03935___ywa    547 AACGTCGACAGCCTCGTCCCTCTGACTCCGAATCTAAGCGGTAATAAAGT    596

BSNT_05883___    582 CGGCATTCCGGTCGTCGGCATTAAGAAAGAAGACGGCGAAGCACTTACCC    631
                     ||..|||||.||.||||||.|.||.||.||||||||.|||      |..|
BL03935___ywa    597 CGATATTCCAGTTGTCGGCGTCAAAAAGGAAGACGGGGAA------AAGC    640

BSNT_05883___    632 AGC------AAAAAGAAGCCACCTTAAAACTAAAAGCATTC--ACAAACC    673
                     .||      ||.|||||||.|.|.|.||.||.|||||  ||  |.|||.|
BL03935___ywa    641 TGCTTTCTGAACAAGAAGCGATCCTGAAGCTGAAAGC--TCATAAAAATC    688

BSNT_05883___    674 AAACCTCTCAGAACATCATCGGAATTAAAAAACCAAAGAACA----TCAA    719
                     |||||||.||.|||.|.|||||..|....|||.||||    |    ||||
BL03935___ywa    689 AAACCTCGCAAAACGTAATCGGCGTCCGCAAAGCAAA----AGGTGTCAA    734

BSNT_05883___    720 ACATCCAGACATTGTGTACGTGACGGCCCATTACGACAGTGTTCCTTTTT    769
                     |.||||.|||||.||.||.|||||..|.|||||.|||||.|||||.|.|.
BL03935___ywa    735 AAATCCTGACATCGTTTATGTGACTTCGCATTATGACAGCGTTCCATATG    784

BSNT_05883___    770 CACCCGGAGCAAATGACAACGGCTCAGGAACCTCTGTTATGCTGGAGATG    819
                     ||||.|||||.||||||||.|.|||.||.||.||.||..|.||.||..||
BL03935___ywa    785 CACCGGGAGCCAATGACAATGCCTCCGGCACTTCAGTCGTCCTTGAACTG    834

BSNT_05883___    820 GCGCGTGTCTTAAAAAGCGTTCCATCTGATAAAGAAATCCGCTTTATCGC    869
                     ||.||..|.||.||.|..||.|||.|.||.||||||||.||||||||..|
BL03935___ywa    835 GCCCGAATTTTGAAGACAGTGCCAGCCGACAAAGAAATTCGCTTTATTAC    884

BSNT_05883___    870 TTTCGGCGCCGAAGAGCTCGGCCTGCTCGGCTC-CTCTCACTATGT-AGA    917
                     .|||||.||||||||..||||.||.|||||.|| |.| ||.||||| ||.
BL03935___ywa    885 ATTCGGAGCCGAAGAAATCGGACTCCTCGGTTCGCGC-CATTATGTCAGC    933

BSNT_05883___    918 TCATCTATCGGAAA--AAGAGCTGAAACGAAGCGAAGTGAACTTCAACTT    965
                     .||| |.||  |||  |.||..|.|||||.||||..|..|||||.|||||
BL03935___ywa    934 ACAT-TGTC--AAATCAGGAAGTCAAACGGAGCGTTGCCAACTTTAACTT    980

BSNT_05883___    966 AGATATGGTAGGC-ACAAGCTGGGAAAAAGCGTCTGAGCTGTATGTCAAC   1014
                     ||||||||| ||| |||||||||||.||.||.||..|||||||..||||.
BL03935___ywa    981 AGATATGGT-GGCGACAAGCTGGGAGAATGCTTCACAGCTGTACATCAAT   1029

BSNT_05883___   1015 AC-----ATTGGACGGCCAATCTAACTATGTTTGGGAATCCAGCCA--TA   1057
                     ||     |..|..||||.||.||     .||.|||     ||||.|  ||
BL03935___ywa   1030 ACGCCCGACGGTTCGGCAAACCT-----CGTCTGG-----CAGCTAAGTA   1069

BSNT_05883___   1058 CAGCTGCT-------------GAAAA----AATTGGGTTTGACAGCCTGT   1090
                     .|||.|||             |||||    .|||...|||          
BL03935___ywa   1070 AAGCCGCTTCTTTAAGCCTTGGAAAAGACGTATTATTTTT----------   1109

BSNT_05883___   1091 CTCTGACA-CAGGGAGGATCATCTGATCATGTGCCATTCCACGAAGCCGG   1139
                          ||| ||.||.||||||||.||.|||||.||||||||.||||||||
BL03935___ywa   1110 -----ACATCAAGGCGGATCATCCGACCATGTCCCATTCCATGAAGCCGG   1154

BSNT_05883___   1140 CATTGATTCCGCCAACTTTATTTGGGGAGACCCGGAAACAGAAGAAGTTG   1189
                     |||.||.||.|||||||||||||||.||||.||||.|||||..|...|.|
BL03935___ywa   1155 CATCGACTCGGCCAACTTTATTTGGAGAGAGCCGGGAACAGGCGCTTTGG   1204

BSNT_05883___   1190 AGCCGTGGTATCATACCCCCGAAGACTCGATCGAACATATCAGCAAAGAA   1239
                     ||||.|||||.||.|||||..|.|||.||||.||||||||||||||||| 
BL03935___ywa   1205 AGCCTTGGTACCACACCCCTTACGACACGATTGAACATATCAGCAAAGA-   1253

BSNT_05883___   1240 CGCCTCCAGCAAGCAGGCGATCTTGTG---ACAGCCGCAGTCTATGAG--   1284
                                  |||||       ||   |||||||  |||.|...|  
BL03935___ywa   1254 -------------CAGGC-------TGAAAACAGCCG--GTCAAATCGCG   1281

BSNT_05883___   1285 ------GCTGTGAA----------AAGAGAGAAGAAACCA-AAAACCATT   1317
                           ||||||.|          ||||   |.||||.|| ||||||.| 
BL03935___ywa   1282 GGAACAGCTGTGTATAACTTCACCAAGA---AGGAAAACAGAAAACCGT-   1327

BSNT_05883___   1318 AAGAAACAAATGAAGGCCAAAGCAACTGACATTTTTGAAGATATCAAATA   1367
                                              ||.|||..|   .||.|..|.|.||
BL03935___ywa   1328 -------------------------CTTACAGCT---CAGTTGCCCAGTA   1349

BSNT_05883___   1368 A   1368
                     |
BL03935___ywa   1350 A   1350


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