Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05816 and BL03893

See DNA alignment / Visit BSNT_05816 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:53
# Commandline: needle
#    -asequence pep-align/BSNT_05816___ywdA.1.5803.seq
#    -bsequence pep-align/BL03893___ywdA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05816___ywdA-BL03893___ywdA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05816___ywdA-BL03893___ywdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05816___ywdA
# 2: BL03893___ywdA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 88
# Identity:      43/88 (48.9%)
# Similarity:    60/88 (68.2%)
# Gaps:           6/88 ( 6.8%)
# Score: 196.5
# 
#
#=======================================

BSNT_05816___      1 MNIHEQKITPECLEKAANQVEDKREEYKDVLLQLKKMLGG----TTPHSE     46
                     |:.::||:|...|:|.|:.:||.||||..:|||:||::||    ..|:.|
BL03893___ywd      1 MDQNQQKLTAMRLKKIADHIEDTREEYNGLLLQMKKLIGGIEDKPIPNDE     50

BSNT_05816___     47 TAE-ILTRAYEQMKEYALFVQSIETFLRKSANNLKIK-     82
                     ..: .|...|||||||||||:|||:|||.||..:|.: 
BL03893___ywd     51 EVQKKLQDTYEQMKEYALFVESIESFLRSSARTIKRES     88


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.