Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05816 and BL03893

See Amino acid alignment / Visit BSNT_05816 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:53
# Commandline: needle
#    -asequence dna-align/BSNT_05816___ywdA.1.5803.seq
#    -bsequence dna-align/BL03893___ywdA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05816___ywdA-BL03893___ywdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05816___ywdA-BL03893___ywdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05816___ywdA
# 2: BL03893___ywdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 287
# Identity:     170/287 (59.2%)
# Similarity:   170/287 (59.2%)
# Gaps:          58/287 (20.2%)
# Score: 463.5
# 
#
#=======================================

BSNT_05816___      1 TTGAATATACATGAACAGAAGATAA--CACCGGAAT--GTTTGGAAAAGG     46
                     .||.||   ||..|.|||.||| ||  .||||..||  |||||.||||..
BL03893___ywd      1 GTGGAT---CAAAACCAGCAGA-AATTGACCGCTATGCGTTTGAAAAAAA     46

BSNT_05816___     47 CTGCTAACCAAGTTGAAGATAAGCGGGAAGAATATAAGGATGTGCTGCTT     96
                     ..||..||||..||||.||||.|.|.||.|||||.||.|.|.||||.||.
BL03893___ywd     47 TAGCGGACCATATTGAGGATACGAGAGAGGAATACAATGGTTTGCTCCTC     96

BSNT_05816___     97 CAGCTGAAAAAAATGCTTGGCGG------------AACAACGCC------    128
                     |||.||||.||..||.|.|||||            |.|||..||      
BL03893___ywd     97 CAGATGAAGAAGCTGATCGGCGGTATTGAAGATAAACCAATTCCAAATGA    146

BSNT_05816___    129 -------GCACAGTGAAACGGCGGAAATTCTCACGCGGGCA--TATGAAC    169
                            |.|||   |||     ||||.| |||   ||.||  |||||||
BL03893___ywd    147 TGAGGAAGTACA---AAA-----GAAACT-TCA---GGACACTTATGAAC    184

BSNT_05816___    170 AAATGAAGGAATATGCACTTTTTGTTCAGTCGATAGAAACATTTTTGAGG    219
                     |||||||.||||||||.||||||||..|.|||||.|||.|.||.||.||.
BL03893___ywd    185 AAATGAAAGAATATGCTCTTTTTGTGGAATCGATCGAATCTTTCTTAAGA    234

BSNT_05816___    220 AAATCTGCA--AACAATTTA-----AAAATTAAATAA    249
                     ..|||||||  |||.||..|     |||..|||    
BL03893___ywd    235 TCATCTGCAAGAACGATCAAACGGGAAAGCTAA----    267


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