Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05829 and BL03886
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence pep-align/BSNT_05829___rodA.1.5803.seq
# -bsequence pep-align/BL03886___rodA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05829___rodA-BL03886___rodA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05829___rodA-BL03886___rodA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05829___rodA
# 2: BL03886___rodA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 395
# Identity: 267/395 (67.6%)
# Similarity: 327/395 (82.8%)
# Gaps: 8/395 ( 2.0%)
# Score: 1405.5
#
#
#=======================================
BSNT_05829___ 1 MSRYKKQQSPFYQGDLIFIFGVFFIISVVSIYAA-GQFGQYGNTDWIQQI 49
|.:.|...||:||||||||..:||:|||:::||| ..|...|.. .:|:
BL03886___rod 1 MGQKKNTTSPYYQGDLIFILAMFFLISVIAVYAAEPSFSPKGYP--AKQL 48
BSNT_05829___ 50 VFYFLGAVAITVLLYFDLEQLEKLSLYIFIIGILSLIILKISPESIAPVI 99
.||.||...|...||||||||||||:||::.|||||::||:|||||||:.
BL03886___rod 49 FFYLLGISVIVGFLYFDLEQLEKLSIYIYLFGILSLLVLKVSPESIAPIK 98
BSNT_05829___ 100 KGAKSWFRIGRITIQPSEFMKVGLIMMLASVIGKANPKGVRTLRDDIHLL 149
.||||||:.|.||:|||||||:||||||||||.||:|||.|::::|:.||
BL03886___rod 99 NGAKSWFQFGTITLQPSEFMKIGLIMMLASVISKASPKGSRSMQEDVRLL 148
BSNT_05829___ 150 LKIAGVAVIPVGLILMQDAGTAGICMFIVLVMVFMSGINWKLIAIIAGSG 199
||||||:.:||||||||||||||||||.|.||||:||:|||||.|:||||
BL03886___rod 149 LKIAGVSAVPVGLILMQDAGTAGICMFFVAVMVFLSGVNWKLIFIVAGSG 198
BSNT_05829___ 200 ILLISLILLVMINFPDVAK-SVGIQDYQIKRVTSWVSASNETQEDSNDSW 248
|.|:.|:|.::||||:.:| ::.||.|||.||.:||.:| |:|:||::
BL03886___rod 199 ITLVLLVLFLVINFPEFSKDTLHIQQYQINRVMTWVDSS---QQDANDTY 245
BSNT_05829___ 249 QVDQAIMAIGSGGILGNGISNLKVYVPESTTDFIFSIIGESFGFIGCAVV 298
|.::|:.|||||.|.|.||:||||||||..||||:::||||||||||..|
BL03886___rod 246 QTEKAVTAIGSGEIFGTGINNLKVYVPEGQTDFIYAVIGESFGFIGCTFV 295
BSNT_05829___ 299 VIMFFFLIYRLVVLIDKIHPFNRFASFFCVGYTALIVIHTFQNIGMNIGI 348
|||||.||||||||||||||:|:||||||||||||||||||||||||:|:
BL03886___rod 296 VIMFFLLIYRLVVLIDKIHPYNKFASFFCVGYTALIVIHTFQNIGMNVGL 345
BSNT_05829___ 349 MPVTGIPLLFVSYGGSSTLSTLIGFGIVYNASVQLTKYRSYLFNS 393
|||||:||||:||||||.||.|||:.||||||.|||||:.|:|.
BL03886___rod 346 MPVTGVPLLFISYGGSSVLSALIGYAIVYNASCQLTKYKGYMFK- 389
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