Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05829 and BL03886

See Amino acid alignment / Visit BSNT_05829 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:54
# Commandline: needle
#    -asequence dna-align/BSNT_05829___rodA.1.5803.seq
#    -bsequence dna-align/BL03886___rodA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05829___rodA-BL03886___rodA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05829___rodA-BL03886___rodA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05829___rodA
# 2: BL03886___rodA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1249
# Identity:     825/1249 (66.1%)
# Similarity:   825/1249 (66.1%)
# Gaps:         146/1249 (11.7%)
# Score: 2493.5
# 
#
#=======================================

BSNT_05829___      1 ATGAGTCGATATAAGAAACA---GCAAAGCCCCTTTTACCAGGGGGATTT     47
                     |||.|.|   |.||||||.|   |..|||.||||.|||.|||||.|||||
BL03886___rod      1 ATGGGCC---AGAAGAAAAATACGACAAGTCCCTATTATCAGGGCGATTT     47

BSNT_05829___     48 GATTTTTATATTTGGTGTGTTTTTTATTATAAGCGTAGTATCAATTTATG     97
                     ||||||||||||.|...||||.|||.|.||.||.||..|..|..||||.|
BL03886___rod     48 GATTTTTATATTAGCCATGTTCTTTTTAATCAGTGTGATCGCTGTTTACG     97

BSNT_05829___     98 CTGC----CGGTCAGTTTGGGCAGTATGGGAACACGGATTGG--ATTCAG    141
                     ||||    |.|||..|||              |||.||..||  ||.|.|
BL03886___rod     98 CTGCGGAGCCGTCTTTTT--------------CACCGAAGGGTTATCCGG    133

BSNT_05829___    142 CA----AATTG-TGTTTTATTTTTTGGGGGCTG-TTGCCATTACAGT---    182
                     ||    ||||| |.||||||          ||| |.|.||||.|.||   
BL03886___rod    134 CAAAGCAATTGTTCTTTTAT----------CTGCTCGGCATTTCGGTGAT    173

BSNT_05829___    183 --TC----TTTTGTACTTTGATTTAGAACAGCTTGAAAAGTTAAG--TTT    224
                       ||    ||.|.||.||||||.|.||.|||||||||||||||||  |||
BL03886___rod    174 CGTCGGCTTTCTCTATTTTGATCTGGAGCAGCTTGAAAAGTTAAGCATTT    223

BSNT_05829___    225 ATATATTTTTATCATTGGTATTTTATCTTTGATTATTCTTAAAA-TCAGT    273
                     |.||||.|||||  |.||.||.||.||.||| .|..|.|||||| |.|||
BL03886___rod    224 ACATATATTTAT--TCGGCATCTTGTCGTTG-CTCGTGTTAAAAGTTAGT    270

BSNT_05829___    274 CCCGAGTCTATTGCACCTGTTATTAAAGGGGCAAAAAGTTGGTTTAGGAT    323
                     ||.|||||.||.||.||..|||..||.||.||||||||.||||||....|
BL03886___rod    271 CCGGAGTCGATCGCTCCGATTAAAAACGGCGCAAAAAGCTGGTTTCAATT    320

BSNT_05829___    324 CGGTAGAATAACAATACAGCCGTCAGAGTTTATGAAGGTTGGTTTGATTA    373
                     .||||..||.||..|.||||||||.||.||||||||..|.||..||||||
BL03886___rod    321 TGGTACGATCACGCTGCAGCCGTCGGAATTTATGAAAATCGGCCTGATTA    370

BSNT_05829___    374 TGATGCTTGCTTCAGTTATTGGAAAAGCAAATCCTAAAGGAGTTCG----    419
                     |||||||.|||||.||.|||...|||||||.|||.||||  |.|||    
BL03886___rod    371 TGATGCTGGCTTCGGTGATTTCCAAAGCAAGTCCGAAAG--GCTCGCGCT    418

BSNT_05829___    420 -GACGCTTAGGGATGATATCCACTTGTTATTAAAGATTGCGG--GTGTC-    465
                      ||.||   .|||.|||.|.|.|.||||..|.||.||.||||  ||||| 
BL03886___rod    419 CGATGC---AGGAGGATGTTCGCCTGTTGCTGAAAATCGCGGGAGTGTCG    465

BSNT_05829___    466 GCAGTTATTCCTGTAGGTCTTATCTTGATGCAGGATGCTGGGACTGCGGG    515
                     ||.|   ||||.||.||..|.||.||.||||||||.||.||.||.||.||
BL03886___rod    466 GCGG---TTCCGGTCGGATTGATTTTAATGCAGGACGCCGGTACGGCCGG    512

BSNT_05829___    516 AATATGTATGTTTATCGTTCTT-------GTAATGGTTTTTATGTCAGGG    558
                     .||.||.||       ||||||       ||.|||||.|||.|.|||||.
BL03886___rod    513 TATCTGCAT-------GTTCTTTGTCGCCGTTATGGTGTTTTTATCAGGC    555

BSNT_05829___    559 ATAAACTGGAAATTGATTGCGATCATA---GCTGGTTCAGGTATCTTACT    605
                     .|.||||||||..|||||   .|||||   ||.||.||.||.|||...||
BL03886___rod    556 GTGAACTGGAAGCTGATT---TTCATAGTCGCGGGATCGGGCATCACGCT    602

BSNT_05829___    606 CAT--------TTCATTAATTTTATTAGTAATGATAAACTTTCCTGACGT    647
                     |.|        |||     |.||.||.|   ||||.||.|||||.||..|
BL03886___rod    603 CGTACTGCTCGTTC-----TGTTTTTGG---TGATCAATTTTCCGGAGTT    644

BSNT_05829___    648 TGCTAA--AT-CAGTTGGA-ATACAGGATTATCAAATTAAGCGCGTCACT    693
                     |.|.||  || || |||.| ||.|||.|.|||||.||.||.||.||.|..
BL03886___rod    645 TTCAAAGGATACA-TTGCATATCCAGCAATATCAGATCAACCGGGTGATG    693

BSNT_05829___    694 TCTTGGGTGTCTGCTTCAAATGAGACA-CAGGAAGATTCAAATGACAGCT    742
                     .|.|||||   .|.|||    |||.|| |||||.|   |.|||||.|..|
BL03886___rod    694 ACATGGGT---CGATTC----GAGCCAGCAGGACG---CGAATGATACGT    733

BSNT_05829___    743 GGCAAGTTGACC----AGGCCATCATGGCAATAGGATCTGGTGGTATTTT    788
                     ..||    ||||    |.|||.|.|.|||.||.||.||.||.|..||.||
BL03886___rod    734 ATCA----GACCGAAAAAGCCGTTACGGCGATCGGCTCAGGAGAAATCTT    779

BSNT_05829___    789 AGGTAATGGTATTTCTAATTTGAAGGTTTATGTTCCAGAGAGTAC-GACT    837
                     .||.|..||.|||...||||||||.||.||.|||||.|| ||..| .||.
BL03886___rod    780 CGGAACGGGCATTAACAATTTGAAAGTATACGTTCCTGA-AGGCCAAACC    828

BSNT_05829___    838 GACTTTATCTTTTCTATAATAGGTG--AGTCATTTGGCTTTATAGGCTGT    885
                     ||.||.||||.|.|..|.||.||.|  |||  ||.||||||||.||||||
BL03886___rod    829 GATTTCATCTATGCCGTCATCGGCGAAAGT--TTCGGCTTTATCGGCTGT    876

BSNT_05829___    886 GCAGTTGTTGTCATCATGTTCTTCTTTTTAATCTACAGGCTTGTCGTTCT    935
                     .||.||||.|||||||||||.|||.||.|.||.|||.||||||||||.||
BL03886___rod    877 ACATTTGTCGTCATCATGTTTTTCCTTCTCATTTACCGGCTTGTCGTGCT    926

BSNT_05829___    936 GATAGACAAAATACATCCGTTTAAC-CGTTTCGCTTCTTTCTTTTGCGTT    984
                     |||.||.||.|||||.||||..||| .|||| ||.||.||.||.||.|||
BL03886___rod    927 GATTGATAAGATACACCCGTACAACAAGTTT-GCATCGTTTTTCTGTGTT    975

BSNT_05829___    985 GGCTATACGGCGTTAATTGTGATCCACACATTCCAGAATATCGGAATGAA   1034
                     ||.|||||||||.|.|||||.||||||||||||||.||||||||||||||
BL03886___rod    976 GGGTATACGGCGCTGATTGTCATCCACACATTCCAAAATATCGGAATGAA   1025

BSNT_05829___   1035 CATCGGCATTATGCCTGTTACCGGGATTCCGCTGCTGTTTGTCAGCTATG   1084
                     |.||||..|.|||||.|||||.||..||||.||.|||||..|||||||.|
BL03886___rod   1026 CGTCGGGCTGATGCCGGTTACGGGCGTTCCCCTTCTGTTCATCAGCTACG   1075

BSNT_05829___   1085 GGGGAAGCTCGACACTTTCCACGTTAATCGGATTTGGGATTGTATATAAT   1134
                     |.||.|||||...|.|.|||.||.|.|||||.|.||.|||.||.|||||.
BL03886___rod   1076 GAGGGAGCTCTGTATTGTCCGCGCTGATCGGCTATGCGATCGTTTATAAC   1125

BSNT_05829___   1135 GCAAG-TGTGCAGCTGACGAAATACAGAAGTTATCTTTTTAATTCTTAA   1182
                     ||.|| || .||||||||||||||.|.|.|.|||.|.|||||   .|||
BL03886___rod   1126 GCCAGCTG-CCAGCTGACGAAATATAAAGGCTATATGTTTAA---ATAA   1170


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