Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05829 and BL03886
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence dna-align/BSNT_05829___rodA.1.5803.seq
# -bsequence dna-align/BL03886___rodA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05829___rodA-BL03886___rodA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05829___rodA-BL03886___rodA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05829___rodA
# 2: BL03886___rodA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1249
# Identity: 825/1249 (66.1%)
# Similarity: 825/1249 (66.1%)
# Gaps: 146/1249 (11.7%)
# Score: 2493.5
#
#
#=======================================
BSNT_05829___ 1 ATGAGTCGATATAAGAAACA---GCAAAGCCCCTTTTACCAGGGGGATTT 47
|||.|.| |.||||||.| |..|||.||||.|||.|||||.|||||
BL03886___rod 1 ATGGGCC---AGAAGAAAAATACGACAAGTCCCTATTATCAGGGCGATTT 47
BSNT_05829___ 48 GATTTTTATATTTGGTGTGTTTTTTATTATAAGCGTAGTATCAATTTATG 97
||||||||||||.|...||||.|||.|.||.||.||..|..|..||||.|
BL03886___rod 48 GATTTTTATATTAGCCATGTTCTTTTTAATCAGTGTGATCGCTGTTTACG 97
BSNT_05829___ 98 CTGC----CGGTCAGTTTGGGCAGTATGGGAACACGGATTGG--ATTCAG 141
|||| |.|||..||| |||.||..|| ||.|.|
BL03886___rod 98 CTGCGGAGCCGTCTTTTT--------------CACCGAAGGGTTATCCGG 133
BSNT_05829___ 142 CA----AATTG-TGTTTTATTTTTTGGGGGCTG-TTGCCATTACAGT--- 182
|| ||||| |.|||||| ||| |.|.||||.|.||
BL03886___rod 134 CAAAGCAATTGTTCTTTTAT----------CTGCTCGGCATTTCGGTGAT 173
BSNT_05829___ 183 --TC----TTTTGTACTTTGATTTAGAACAGCTTGAAAAGTTAAG--TTT 224
|| ||.|.||.||||||.|.||.||||||||||||||||| |||
BL03886___rod 174 CGTCGGCTTTCTCTATTTTGATCTGGAGCAGCTTGAAAAGTTAAGCATTT 223
BSNT_05829___ 225 ATATATTTTTATCATTGGTATTTTATCTTTGATTATTCTTAAAA-TCAGT 273
|.||||.||||| |.||.||.||.||.||| .|..|.|||||| |.|||
BL03886___rod 224 ACATATATTTAT--TCGGCATCTTGTCGTTG-CTCGTGTTAAAAGTTAGT 270
BSNT_05829___ 274 CCCGAGTCTATTGCACCTGTTATTAAAGGGGCAAAAAGTTGGTTTAGGAT 323
||.|||||.||.||.||..|||..||.||.||||||||.||||||....|
BL03886___rod 271 CCGGAGTCGATCGCTCCGATTAAAAACGGCGCAAAAAGCTGGTTTCAATT 320
BSNT_05829___ 324 CGGTAGAATAACAATACAGCCGTCAGAGTTTATGAAGGTTGGTTTGATTA 373
.||||..||.||..|.||||||||.||.||||||||..|.||..||||||
BL03886___rod 321 TGGTACGATCACGCTGCAGCCGTCGGAATTTATGAAAATCGGCCTGATTA 370
BSNT_05829___ 374 TGATGCTTGCTTCAGTTATTGGAAAAGCAAATCCTAAAGGAGTTCG---- 419
|||||||.|||||.||.|||...|||||||.|||.|||| |.|||
BL03886___rod 371 TGATGCTGGCTTCGGTGATTTCCAAAGCAAGTCCGAAAG--GCTCGCGCT 418
BSNT_05829___ 420 -GACGCTTAGGGATGATATCCACTTGTTATTAAAGATTGCGG--GTGTC- 465
||.|| .|||.|||.|.|.|.||||..|.||.||.|||| |||||
BL03886___rod 419 CGATGC---AGGAGGATGTTCGCCTGTTGCTGAAAATCGCGGGAGTGTCG 465
BSNT_05829___ 466 GCAGTTATTCCTGTAGGTCTTATCTTGATGCAGGATGCTGGGACTGCGGG 515
||.| ||||.||.||..|.||.||.||||||||.||.||.||.||.||
BL03886___rod 466 GCGG---TTCCGGTCGGATTGATTTTAATGCAGGACGCCGGTACGGCCGG 512
BSNT_05829___ 516 AATATGTATGTTTATCGTTCTT-------GTAATGGTTTTTATGTCAGGG 558
.||.||.|| |||||| ||.|||||.|||.|.|||||.
BL03886___rod 513 TATCTGCAT-------GTTCTTTGTCGCCGTTATGGTGTTTTTATCAGGC 555
BSNT_05829___ 559 ATAAACTGGAAATTGATTGCGATCATA---GCTGGTTCAGGTATCTTACT 605
.|.||||||||..||||| .||||| ||.||.||.||.|||...||
BL03886___rod 556 GTGAACTGGAAGCTGATT---TTCATAGTCGCGGGATCGGGCATCACGCT 602
BSNT_05829___ 606 CAT--------TTCATTAATTTTATTAGTAATGATAAACTTTCCTGACGT 647
|.| ||| |.||.||.| ||||.||.|||||.||..|
BL03886___rod 603 CGTACTGCTCGTTC-----TGTTTTTGG---TGATCAATTTTCCGGAGTT 644
BSNT_05829___ 648 TGCTAA--AT-CAGTTGGA-ATACAGGATTATCAAATTAAGCGCGTCACT 693
|.|.|| || || |||.| ||.|||.|.|||||.||.||.||.||.|..
BL03886___rod 645 TTCAAAGGATACA-TTGCATATCCAGCAATATCAGATCAACCGGGTGATG 693
BSNT_05829___ 694 TCTTGGGTGTCTGCTTCAAATGAGACA-CAGGAAGATTCAAATGACAGCT 742
.|.||||| .|.||| |||.|| |||||.| |.|||||.|..|
BL03886___rod 694 ACATGGGT---CGATTC----GAGCCAGCAGGACG---CGAATGATACGT 733
BSNT_05829___ 743 GGCAAGTTGACC----AGGCCATCATGGCAATAGGATCTGGTGGTATTTT 788
..|| |||| |.|||.|.|.|||.||.||.||.||.|..||.||
BL03886___rod 734 ATCA----GACCGAAAAAGCCGTTACGGCGATCGGCTCAGGAGAAATCTT 779
BSNT_05829___ 789 AGGTAATGGTATTTCTAATTTGAAGGTTTATGTTCCAGAGAGTAC-GACT 837
.||.|..||.|||...||||||||.||.||.|||||.|| ||..| .||.
BL03886___rod 780 CGGAACGGGCATTAACAATTTGAAAGTATACGTTCCTGA-AGGCCAAACC 828
BSNT_05829___ 838 GACTTTATCTTTTCTATAATAGGTG--AGTCATTTGGCTTTATAGGCTGT 885
||.||.||||.|.|..|.||.||.| ||| ||.||||||||.||||||
BL03886___rod 829 GATTTCATCTATGCCGTCATCGGCGAAAGT--TTCGGCTTTATCGGCTGT 876
BSNT_05829___ 886 GCAGTTGTTGTCATCATGTTCTTCTTTTTAATCTACAGGCTTGTCGTTCT 935
.||.||||.|||||||||||.|||.||.|.||.|||.||||||||||.||
BL03886___rod 877 ACATTTGTCGTCATCATGTTTTTCCTTCTCATTTACCGGCTTGTCGTGCT 926
BSNT_05829___ 936 GATAGACAAAATACATCCGTTTAAC-CGTTTCGCTTCTTTCTTTTGCGTT 984
|||.||.||.|||||.||||..||| .|||| ||.||.||.||.||.|||
BL03886___rod 927 GATTGATAAGATACACCCGTACAACAAGTTT-GCATCGTTTTTCTGTGTT 975
BSNT_05829___ 985 GGCTATACGGCGTTAATTGTGATCCACACATTCCAGAATATCGGAATGAA 1034
||.|||||||||.|.|||||.||||||||||||||.||||||||||||||
BL03886___rod 976 GGGTATACGGCGCTGATTGTCATCCACACATTCCAAAATATCGGAATGAA 1025
BSNT_05829___ 1035 CATCGGCATTATGCCTGTTACCGGGATTCCGCTGCTGTTTGTCAGCTATG 1084
|.||||..|.|||||.|||||.||..||||.||.|||||..|||||||.|
BL03886___rod 1026 CGTCGGGCTGATGCCGGTTACGGGCGTTCCCCTTCTGTTCATCAGCTACG 1075
BSNT_05829___ 1085 GGGGAAGCTCGACACTTTCCACGTTAATCGGATTTGGGATTGTATATAAT 1134
|.||.|||||...|.|.|||.||.|.|||||.|.||.|||.||.|||||.
BL03886___rod 1076 GAGGGAGCTCTGTATTGTCCGCGCTGATCGGCTATGCGATCGTTTATAAC 1125
BSNT_05829___ 1135 GCAAG-TGTGCAGCTGACGAAATACAGAAGTTATCTTTTTAATTCTTAA 1182
||.|| || .||||||||||||||.|.|.|.|||.|.||||| .|||
BL03886___rod 1126 GCCAGCTG-CCAGCTGACGAAATATAAAGGCTATATGTTTAA---ATAA 1170
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