Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05877 and BL03854

See DNA alignment / Visit BSNT_05877 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence pep-align/BSNT_05877___gspA.1.5803.seq
#    -bsequence pep-align/BL03854___gspA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05877___gspA-BL03854___gspA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05877___gspA-BL03854___gspA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05877___gspA
# 2: BL03854___gspA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     204/288 (70.8%)
# Similarity:   238/288 (82.6%)
# Gaps:           3/288 ( 1.0%)
# Score: 1112.0
# 
#
#=======================================

BSNT_05877___      1 MRKDEIMHIVSCADDNYARHLGGMFVSLLTNMDQEREVKLYVIDGGIKPD     50
                     |:.|..|||:||.|:|||:||..||.||||||||.||||||||||||:|:
BL03854___gsp      1 MKSDRTMHIISCTDNNYAQHLSVMFSSLLTNMDQTREVKLYVIDGGIEPE     50

BSNT_05877___     51 NKKRLEETTLKFGVPIEFLEVDTNMYEHAVESSHITKAAYYRISIPDLIK    100
                     ||||||||||:||.||.||.|:.:.|:.|||||||||||||||||||||.
BL03854___gsp     51 NKKRLEETTLQFGAPITFLNVEKSQYDKAVESSHITKAAYYRISIPDLID    100

BSNT_05877___    101 DESIKRMIYIDCDALVLEDISKLWDLDIAPYTVAAVEDAGQHERLKEMNV    150
                     |||:|||||:|||||||||||||||:||:||..|||||||||||||:||:
BL03854___gsp    101 DESVKRMIYVDCDALVLEDISKLWDMDISPYFAAAVEDAGQHERLKKMNI    150

BSNT_05877___    151 TDTGKYFNSGIMIIDFESWRNQNITEKVINFINEHPDEDFLVLHDQDALN    200
                     :|..||||||:||||.|:||..:|::|||:|||.: |||..|.|||||||
BL03854___gsp    151 SDEAKYFNSGLMIIDMEAWRKNDISKKVIDFINNN-DEDMFVFHDQDALN    199

BSNT_05877___    201 AILYDQWYELHPRWNAQTYIMLKLKTPPTLLGRKQYNETRENPAIVHFCG    250
                     |||||||.||||||||||:|:||.|||.:|:.:|:|.|||.|||||||||
BL03854___gsp    200 AILYDQWLELHPRWNAQTHIILKEKTPASLIDQKRYMETRANPAIVHFCG    249

BSNT_05877___    251 GEKPWNSNTKHPYRDEYFHYMSYTKWNTIGNPAINQ--    286
                     |.|||||||.|||..:||.|:..|.:|.....:.|.  
BL03854___gsp    250 GNKPWNSNTSHPYARQYFKYLQSTAFNQPAKLSKNHVS    287


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