Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05877 and BL03854

See Amino acid alignment / Visit BSNT_05877 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence dna-align/BSNT_05877___gspA.1.5803.seq
#    -bsequence dna-align/BL03854___gspA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05877___gspA-BL03854___gspA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05877___gspA-BL03854___gspA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05877___gspA
# 2: BL03854___gspA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 901
# Identity:     623/901 (69.1%)
# Similarity:   623/901 (69.1%)
# Gaps:          77/901 ( 8.5%)
# Score: 2074.5
# 
#
#=======================================

BSNT_05877___      1 TTGAGGAAA---GATGAAATCATGCATATCGTATCATGCGCAGATGATAA     47
                        |.||||   ||...||.|||||||||..|.||.||..||||..||||
BL03854___gsp      1 ---ATGAAAAGCGACCGAACCATGCATATTATTTCTTGTACAGACAATAA     47

BSNT_05877___     48 TTATGCTCGTCATTTAGGTGGGATGTTCGTTTCTTTATTGACTAACATGG     97
                     .||.||.|..||||||.|.|.|||||||...||.||..||||.||.||||
BL03854___gsp     48 CTACGCACAGCATTTAAGCGTGATGTTCTCATCATTGCTGACGAATATGG     97

BSNT_05877___     98 ATCAGGAGAGAGAGGTAAAATTATACGTCATTGATGGCGGAATTAAGCCT    147
                     |||||..|.|.|||||.|||.|.||.|||||.||.||.||.|||.|.||.
BL03854___gsp     98 ATCAGACGCGCGAGGTGAAACTGTATGTCATCGACGGAGGGATTGAACCG    147

BSNT_05877___    148 GATAACAAAAAAAGACTGGAAGAAACCACTTTGAAATTCGGAGTGCCGAT    197
                     ||.||.|||||..|.||||||||.||.||..|..|||||||||..||.||
BL03854___gsp    148 GAGAATAAAAAGCGTCTGGAAGAGACGACCCTCCAATTCGGAGCTCCTAT    197

BSNT_05877___    198 T-GAGTTTTTAGAAGTGGATA----CCAACATGTATGAACATGCGGTAGA    242
                     | .|.||.||| |.|||||.|    |||    ||||||..|.|||||.||
BL03854___gsp    198 TACATTTCTTA-ATGTGGAAAAAAGCCA----GTATGACAAAGCGGTCGA    242

BSNT_05877___    243 GAGCAGCCATATTACAAAAGCCGCGTATTACCGCATTTCGATTCCCGACT    292
                     .||||||||||||||||||||.||.||.||.||.|||||.||||||||..
BL03854___gsp    243 AAGCAGCCATATTACAAAAGCGGCTTACTATCGAATTTCCATTCCCGATC    292

BSNT_05877___    293 TAATTAAGGATGAAAGCATCAAACGAATGATTTACATCGATTGCGATGCG    342
                     |.|||.|.||.|||..|.|.|||||||||||.||..||||.|||||.|| 
BL03854___gsp    293 TGATTGATGACGAATCCGTTAAACGAATGATCTATGTCGACTGCGACGC-    341

BSNT_05877___    343 CTT-GTCCTAGAGGATATTTCTAAGTTATGGGACTTAGACATTGCGCCTT    391
                     ||| ||..||||||||||.||.|||.|.||||||.|.||||||.|.||||
BL03854___gsp    342 CTTAGTTTTAGAGGATATATCGAAGCTGTGGGACATGGACATTTCACCTT    391

BSNT_05877___    392 ACACCGTAGCCGCTGTTGAGGATGCGGGGCAGCATGAACGCCTGAAAGAA    441
                     |...||..||.||.|||||.|||||.||.|||||||||||.||||||.|.
BL03854___gsp    392 ATTTCGCGGCGGCGGTTGAAGATGCAGGCCAGCATGAACGGCTGAAAAAG    441

BSNT_05877___    442 ATGAACGTCACTGATACAGGGAAGTATTTTAACTCAGGTATCATGATTAT    491
                     ||||||.|||..|||..||..||.|||||||||||.||..|.|||||.||
BL03854___gsp    442 ATGAACATCAGCGATGAAGCAAAATATTTTAACTCGGGCTTAATGATCAT    491

BSNT_05877___    492 TGATTTTGAGTCTTGGAGAAATCAAA--ACATCACAGAAAAAGTCATCAA    539
                     .|||.|.||..||||||||||  |||  ||||..|..|||||||||||.|
BL03854___gsp    492 CGATATGGAAGCTTGGAGAAA--AAACGACATTTCGAAAAAAGTCATCGA    539

BSNT_05877___    540 CTTTATCAATGAACACCCAGACGAAGACTTTCTTGTGCTGCATGACCAAG    589
                     |||||||||| ||||.|  ||.||||||.|..|||||.|.||||||||||
BL03854___gsp    540 CTTTATCAAT-AACAAC--GATGAAGACATGTTTGTGTTTCATGACCAAG    586

BSNT_05877___    590 ATGCACTGAATGCGA-TCTTGTATGATCAGTGGTATGAACTTCATCCGCG    638
                     |.|||.||||.|||| |||| ||||||||||||...||||||||||||.|
BL03854___gsp    587 ACGCATTGAACGCGATTCTT-TATGATCAGTGGCTCGAACTTCATCCGAG    635

BSNT_05877___    639 CTGGAACGCTCAAACCTATATCATGTTAAAGCTGAAAACCCCACCGACT-    687
                     .||||||||.|||||..|.||.||.|||||....||||   |||||.|| 
BL03854___gsp    636 GTGGAACGCCCAAACACACATTATTTTAAAAGAAAAAA---CACCGGCTT    682

BSNT_05877___    688 --CTGTTAGGGCGGAAGCAATATAATGAAACGAGAGAAAACCCGGCAATC    735
                       ||..|.|..|..||||..||||..|||||.||.|.|||||||||||||
BL03854___gsp    683 CCCTCATCGATCAAAAGCGCTATATGGAAACAAGGGCAAACCCGGCAATC    732

BSNT_05877___    736 GTGCACTTCTGCGGCGGAGAAAAGCCTTGGAACTCCAATACAAAACATCC    785
                     ||.||.||||||||||||.|.|||||||||||.||.||.||...|||.||
BL03854___gsp    733 GTTCATTTCTGCGGCGGAAACAAGCCTTGGAATTCAAACACCTCACACCC    782

BSNT_05877___    786 GTATCGC----------GATGAGTATTTCCATTACATGTCCTATACGAAG    825
                     ||| |||          ..|.|||||||.||.|.||...|||.||...||
BL03854___gsp    783 GTA-CGCCCGTCAATATTTTAAGTATTTGCAGTCCACAGCCTTTAACCAG    831

BSNT_05877___    826 TGGAATACGATTGGGAATCCGGCGA-----TC----AACCA------ATA    860
                                       |||||.|     ||    |||||      .||
BL03854___gsp    832 ------------------CCGGCCAAATTGTCTAAAAACCATGTCAGCTA    863

BSNT_05877___    861 A    861
                     |
BL03854___gsp    864 A    864


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05877 and BL03854

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
